BAC Information

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BAC

Clone NameMSMg01-355C07
Chromosome5 (Build37)
Map Location 137,494,145 - 137,494,536
singlet/doubletsinglet
Overlap genenone
Upstream geneDtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992
Downstream geneVgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355C07.T7 (MSMg01no355_c07.b1)MSMg01-355C07.TJ (MSMg01no355_c07.g1)
ACCAG465601AG465602
length798786
length of high quality
(start - end)		403 (45 - 447)449 (72 - 520)
definitionCHROMAT_FILE: MSMg01no355_c07.b1 PHD_FILE: MSMg01no355_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:31 2005CHROMAT_FILE: MSMg01no355_c07.g1 PHD_FILE: MSMg01no355_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAACCATTCCTGGTCTAGAGAATGAGTTTCAGGACAGCCAGGGCT
ACACAGAGAAACCCTATCTCAAAAAAAAAAAAAAAAAAAAAAACCAACCA
CAACAATAATTCTGTATTTTTTAAAAAACACTATGTTTGCATCGGCAGGA
CTGAGAGCCGTGAGGTGTCATGTCTGAGGTTCTTTATGGGGCTCTCCTCG
GGCTTCCCTTGCTGCTCCTGGCCTCCTGCCTGTCTGCTGCTCCATTATTC
TTGCTCCTTCCTTTCTTTGGTTTGTTTGTATGGTTGGTGTCTTCATCTTA
GCTGGTTTCACCTCACACCCTTTCTTCCTTCCTTCCTTCCTTTTTTCCTT
CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTACTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTCCTTTTTCCTACCTCCCCCTCTAACTTATTTTTATC
CTTTCCCCTTATAATTCCCTCCTATACTATCCTCATATATTTTCCCTCCT
ATAATTTTCCCCTAACCTTTCTTTTTTTATTTCCCTTCAACATTTTCTTT
TCTTTTCCCCAACAAACAATAAATTTATAATCCCCAATACTCATTCCCCA
CTACCCACCTTCTCATTCTCCCACTCCTCTTTTTCATTATCTTATTCTCT
TATTAATCCCCCTCTTCCCACTTTATTATTTTATCATTATTTACATCAAC
CATACTCCTATCATTATGTATACTCCCACTTTTTCTCACCCTCCTTCG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTGGGTAAGGCACCTACTGTGCAAGCAT
GAAGAGCTGAGCTGGATCCTCCATGGTGTCCATGTTAGTCAGGTGCAGGC
TGTATGGGTAATGTCAGAGCCAGGGAAGCAGAGACAGGAGGATCCTCGGG
CTTGCTAGACAGGCAGCCTGGCCGAATTGATGAGCTCCAGAGCAAGTAAA
AGGACAATCTCAAAAAACAAGACAAAACAAAACAAAAACAAAAAAAAAGA
GGGAGGGCTGGCAAAATGTATCAGCTGGCAAGGGTCTTTGCCACCTAGTC
TGACAACCTAAATTCAATCCCTGGGACTCCCATGGTGGAAGAAGGGAACC
GACTCCTCTGACCTCCATATATACTCCATGCTGTGAATGTGCATGGGCAC
ACACACACACATCACACACATACACACATCTCACACACACACACATCACA
CACATACACACACATACATAACACACACATATATACACCCATACCATACA
CATCACACACACCCCTCACATATACACACTTCACACCCCTCACATACTCA
TACCTAACACTACTCCTTACCCCCCACTCATACCACACACACAACCCTGA
TGGAACCTCCCCGGATGACCCCTGAACTTCTTGATCCTTGTTTCCAGCTC
CCCAAGGGTTGGGGGTTACTGGGTGGGGACCCACCATGCCCATGTTAAAG
GAATTTGGTGGATGCAATTTAGGGTTTTCTTATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_c07.b1 MSMg01no355_c07.b1 CHROMAT_FILE:
MSMg01no355_c07.b1 PHD_FILE: MSMg01no355_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:31 2005
         (403 letters)



>mm_chr5_137493930_137494733
          Length = 804

 Score =  661 bits (342), Expect = 0.0
 Identities = 381/402 (94%), Gaps = 16/402 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaaccattcctggtctagagaatgagtttcaggacagccagggctacacagag 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattccaaacca-gcctggtctagagaatgagtttcaggacagccagggctacacagag 274

                                                                       
Query: 65  aaaccctatctcaaaaaaaaaaaaaaaaaaaaaaaccaaccacaacaataattctgtatt 124
           ||||||||||||||||||||||||| |         ||||||||||||||||||||||||
Sbjct: 275 aaaccctatctcaaaaaaaaaaaaata---------caaccacaacaataattctgtatt 325

                                                                       
Query: 125 ttttaaaaaacactatgtttgcatcggcaggactgagagccgtgaggtgtcatgtctgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttttaaaaaacactatgtttgcatcggcaggactgagagccgtgaggtgtcatgtctgag 385

                                                                       
Query: 185 gttctttatggggctctcctcgggcttcccttgctgctcctggcctcctgcctgtctgct 244
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 386 gttctttatggggctctcctcgggcttcccttgctgcttctggcctcctgcctgtctgct 445

                                                                       
Query: 245 gctccattattcttgctccttcctttctttggtttgtttgtatggttggtgtcttcatct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gctccattattcttgctccttcctttctttggtttgtttgtatggttggtgtcttcatct 505

                                                                       
Query: 305 tagctggtttcacctcacaccctttctt-----ccttccttccttcctttttt-ccttcc 358
           |||||||||||||||||||||||| |||     |||||||||||||||||||| ||||||
Sbjct: 506 tagctggtttcacctcacacccttcctttttttccttccttccttcctttttttccttcc 565

                                                     
Query: 359 ttccttccttccttccttccttccttccttacttccttcctt 400
           |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 566 ttccttccttccttccttccttccttccttccttccttcctt 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 134
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 804
Length adjustment: 9
Effective length of query: 394
Effective length of database: 795
Effective search space:   313230
Effective search space used:   313230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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