BAC Information

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BAC

Clone NameMSMg01-355C16
Chromosome5 (Build37)
Map Location 32,318,920 - 32,319,401
singlet/doubletsinglet
Overlap geneBre
Upstream geneSlc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000
Downstream geneFosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355C16.T7 (MSMg01no355_c16.b1)MSMg01-355C16.TJ (MSMg01no355_c16.g1)
ACCAG465619AG465620
length744746
length of high quality
(start - end)		602 (48 - 649)483 (80 - 562)
definitionCHROMAT_FILE: MSMg01no355_c16.b1 PHD_FILE: MSMg01no355_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:32 2005CHROMAT_FILE: MSMg01no355_c16.g1 PHD_FILE: MSMg01no355_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATT
TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC
TTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGTCCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTA
TGAGGTCCCATTTGTCGATTCTCCATCTTACAGCACAAGCCATTGCTGTT
CTATTCAGGAATTTCCCCCCTGTACCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAA
TACACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCAC
ATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAAT
GCTGTCTTTTTTCCACTGGATGGTTTTGTCAAAGATCAAGTGACCATGGA
TGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGGCTACTTGT
CTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGCTTGAGGTCA
TGCATAGTGATTCCACCACAGGGTATTTTATCATTGAGAATAGCTTTTTG
CTATCCTACCGTTTTTTGTATTCCCGATGAATTTGCCGATTGCN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATAAACTTGGCTGGGATC
CATTTGTCAGTAATGTGTTCTATAAACTTTAACAGAGCCATTTGTTATTT
GTTTGTTTGTTTAACTGCATCTTTCCAAAAACTACATTTACAATTTTTAT
GAGGTCTCTTTTTATCACTTCTTAATTTTATAGAACATTTTTTTGCATCC
TGCTTAATTAAGTCACCTAATCCAATTCAAATTTTCCTAAATTAAATTAA
TTTTTTTGAGATGGTATCACTGGAAGTCCAGACTTCTCCTCGACAAGCTT
TGAGCAGCAGTAGCAGCATGGTAGGCAGAGAGCCCACCCTAATTAAGTTG
TTTCCTTGTAGAAAGTTCATAGTTTTAATTCATGAATACAGGTCTGTATT
CTGCCTCAACTTTATGTATGGTGTGAAGTGAGGGACATGATTTGTATATA
TATTTTTTTAAATTTTCATTCTAGAAACATTGATCAAAAAGACCCAATTT
CCCCCACTGAATTGCTTTAGTATCTTTGTAAAAATATTAGTGGACCATGT
GAGTTTCAGGTCAGCCTGGGCTACATATTGAGTTCCAGATTAACAAATTC
CATATACCCTGAACTTTCATAAAAGGGAGGTATTTTTTGCTTTATGTTGA
GCTTTATCTGAATCCCTTAGGATCTTCAAAATATGGACCTATTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_c16.g1 MSMg01no355_c16.g1 CHROMAT_FILE:
MSMg01no355_c16.g1 PHD_FILE: MSMg01no355_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:32 2005
         (483 letters)



>mm_chr5_32318720_32319602
          Length = 883

 Score =  911 bits (471), Expect = 0.0
 Identities = 480/483 (99%), Gaps = 1/483 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttataaacttggctgggatccatttgtcagtaatgtgttctataaactttaacagagcc 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tttataaacttggctgggatccatttgtcagtaacgtgttctataaactttaacagagcc 260

                                                                       
Query: 61  atttgttatttgtttgtttgtttaactgcatctttccaaaaactacatttacaattttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgttatttgtttgtttgtttaactgcatctttccaaaaactacatttacaattttta 320

                                                                       
Query: 121 tgaggtctctttttatcacttcttaattttatagaacatttttttgcatcctgcttaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaggtctctttttatcacttcttaattttatagaacatttttttgcatcctgcttaatt 380

                                                                       
Query: 181 aagtcacctaatccaattcaaattttcctaaattaaattaatttttttgagatggtatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtcacctaatccaattcaaattttcctaaattaaattaatttttttgagatggtatca 440

                                                                       
Query: 241 ctggaagtccagacttctcctcgacaagctttgagcagcagtagcagcatggtaggcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggaagtccagacttctcctcgacaagctttgagcagcagtagcagcatggtaggcaga 500

                                                                       
Query: 301 gagcccaccctaattaagttgtttccttgtagaaagttcatagttttaattcatgaatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagcccaccctaattaagttgtttccttgtagaaagttcatagttttaattcatgaatac 560

                                                                       
Query: 361 aggtctgtattctgcctcaactttatgtatggtgtgaagtgagggacatgatttgtatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtctgtattctgcctcaactttatgtatggtgtgaagtgagggacatgatttgtatat 620

                                                                       
Query: 421 atatttttttaaattttcattctagaaacattgatcaaaaagacccaatttcccccactg 480
           || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttttttttaa-ttttcattctagaaacattgatcaaaaagacccaatttcccccactg 679

              
Query: 481 aat 483
           |||
Sbjct: 680 aat 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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