Query= MSMg01no355_c23.b1 MSMg01no355_c23.b1 CHROMAT_FILE:
MSMg01no355_c23.b1 PHD_FILE: MSMg01no355_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:34 2005
(517 letters)
>mm_chr5_116903670_116904583
Length = 914
Score = 924 bits (478), Expect = 0.0
Identities = 506/518 (97%), Gaps = 10/518 (1%)
Strand = Plus / Plus
Query: 5 gaattccacagaaataggagatctctagatcttattttttgtttgttttgttttgttttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccacagaaataggagatctctagatcttattttttgtttgttttgttttgttttg 263
Query: 65 -tttttttaaaccccctgctagaagaactggaagattcaggagacatgcagggaaaaagg 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttttttttaaaccccctgctagaagaactggaagattcaggagacatgcagggaaaaagg 323
Query: 124 catgcgattcagagtaaacgaaagtcaaaggaaatcatacaaaaaatatagtcttcaata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catgcgattcagagtaaacgaaagtcaaaggaaatcatacaaaaaatatagtcttcaata 383
Query: 184 aactcaaacagaaagagacaaattaatagaaaagggagggctgtagacacccttaacctc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aactcaaacagaaagagacaaattaatagaaaagggagggctgtagacacccttaacctc 443
Query: 244 aaagaataatcaaaaggaaggaaaggggagcggggaaggaaaaaaaaaaaagaaaagggg 303
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 aaagaataatcaaaaggaaggaaaggggagcggggaaggaaaaaaaaa---gaaaagggg 500
Query: 304 ctatgggcctcaaaaattatatcttggaaattaaaaacgcaaaaggccaaggtttaaatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatgggcctcaaaaattatatcttggaaattaaaaacgcaaaaggccaaggtttaaatt 560
Query: 364 taaccaaaatcctcagctaactctctctctctct--ttctctctctcagaaaaagttgct 421
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 taaccaaaatcctcagctaactctctctctctctctttctctctctcagaaaaagttgct 620
Query: 422 tgcataaaatactgaagaagtgtcatatgggccaaagaaataaagatgagggttggggtc 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 tgcataaaatactgaagaagtgtcatatgggccaaagaaataaagatgagggttgg--tc 678
Query: 482 tctctttct-t-tctttctttctttctttctttctttc 517
||||| ||| | |||||||||||| |||||||||||||
Sbjct: 679 tctctctctctctctttctttcttcctttctttctttc 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 914
Length adjustment: 10
Effective length of query: 507
Effective length of database: 904
Effective search space: 458328
Effective search space used: 458328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_c23.g1 MSMg01no355_c23.g1 CHROMAT_FILE:
MSMg01no355_c23.g1 PHD_FILE: MSMg01no355_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:34 2005
(406 letters)
>mm_chr5_117112834_117113639
Length = 806
Score = 762 bits (394), Expect = 0.0
Identities = 403/406 (99%)
Strand = Plus / Minus
Query: 1 atggcctagacatttcaaaaaaaaaaaaccccacaaaatataggaattggcgtttcagac 60
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 426 atggcctagacatttcaaaaaaaaaaaaacccacaaaatataggaattggcatttcagac 367
Query: 61 atccaacctttatctctgatgtggtgttggcaccattcaccctcaaaggagctaaaatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atccaacctttatctctgatgtggtgttggcaccattcaccctcaaaggagctaaaatgc 307
Query: 121 aaagagagagtaactgtcagagagactccatcaatctcagggtttgaactagatctgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaagagagagtaactgtcagagagactccatcaatctcagggtttgaactagatctgact 247
Query: 181 ctcgtggagcatcgtattaaagaaggtccaccttagatacagcttttggggttgggtacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctcgtggagcatcgtattaaagaaggtccaccttagatacagcttttggggttgggtacc 187
Query: 241 gcctgttgtctcttgctggtgtgcgtgtgatggcttcttcagcctctctgtgcttctgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gcctgttgtctcttgctggtgtgcgtgtgatggcttcttcagcctctctgtgcttctgtt 127
Query: 301 tccttgtcaggggtagtgcttgtgtctaaccacatggctgtcagtatcaagtaagtcaat 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 126 tccttgtcaggggtagtgcttgtgtctaaccacatggctggcagtatcaagtaagtcaat 67
Query: 361 atttacaaagctcttcagaaactgtctggcacatactaaatgttag 406
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 atttacaaagctcttcagaaactgtctggcacatactaaatgttag 21
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space: 316409
Effective search space used: 316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
