BAC Information

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BAC

Clone NameMSMg01-355J10
Chromosome5 (Build37)
Map Location 76,544,850 - 76,739,517
singlet/doubletdoublet
Overlap geneSrd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055
Upstream genePdgfra, LOC100039125, LOC100039143, LOC100039158, LOC100039169, Kit, EG664874, Kdr, Gabarapl2-ps5_758.1
Downstream genePdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355J10.T7 (MSMg01no355_j10.b1)MSMg01-355J10.TJ (MSMg01no355_j10.g1)
ACCAG465940AG465941
length778785
length of high quality
(start - end)		493 (44 - 536)418 (75 - 492)
definitionCHROMAT_FILE: MSMg01no355_j10.b1 PHD_FILE: MSMg01no355_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:05 2005CHROMAT_FILE: MSMg01no355_j10.g1 PHD_FILE: MSMg01no355_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,544,850 - 76,545,335)(76,739,100 - 76,739,517)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATTACTTACTGTGACTCTCCCAGGAGCTCTGCCAGGCTATCAGCAC
AGATGGTATTTGTGTTTCCAAAGGAGGAAATAAAGGTTAAGAAGCTACGG
GACTTGCCAGTGTCACTTAGGAGCAGGTCAGAAGGTCAAATCAGTTTCCT
GTGGTTGTGGGGCCTCTGTGGGAACACCTCTGCTACTCACCTTATCCCAG
TGACCAAGAGAGTCCAGGTAGTCAGGGCATGGGACAGGTGGGGGAGGTAA
GAAGGAAGTCCTAATTCACACCAGTCACTATCTGTCACCTGCCTGCTCTA
CAAAAAGGAAACCAAATGCCCATTTCCTCTGTAAGAACGTTCCTTTCAAT
TAAGCCCCTCACATAATTCAACTCCGCTGTGCTTGAGCCAGCCTTGGGCA
CAAGGTGAAAGCACTCAAAACAGGCCGCTGTCGTCTGCTCTTCTCCGTGA
GGAAGTCGGACCTCTTTTCCAGCTCACCCCTCCCTCTCCAAGTTCACCAC
ACAGGAAAACTGTTCTCCATGTTTGCCCGCGCCTCTTCTGATTACCGAAA
GGCTGTCCCTGTGGTCCCGTGTCTCCCATTAAATTCTCTTTATACATCTT
TCCTTCCCCATTGAATATGACAGGAACCATTGATTTTTTGGCTTAAAGCG
CCCTTTGTCTTCTATCCATCTTTTATTTTTATGGACCCCGTATTACGTTT
TTCTCCTCTTTGGACCTGTATTTCTCCT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAAGAACTCTGAAGAAGGAAGATGCT
GCTTTAAGACAGGCTCTAGCTATGTAGCCAAGGCTAGCCTCAAATGGGGT
TGTTTTAGCCTGTTCTTCCCTTTCTGGCTCTATCTCCACAGTGGTGGACC
TGGGAGTGGGACCGTGGAGACGAGGAACACATGGAGAGTGCCTGACATTC
ATACTGTGTCCAAGAACTTGTTTTTAATGAGGCATGCTGAGCTCTCCTAG
AAACTGGGTCAGCCTCCCATGGCATAGTCTGTTGCTCAACATGGACACAG
ATTAGGTTTAGCCCTGTCTCTGCTGATCTCTTAGTCCACCTACCCCCCAA
TCCCCACCCCCAAGAAGTATACCTAGTCTTCTTGCTGCTTGAATTTCCTT
TCTCTGTGTCAAATGATTCAAGCTCAGACAGTACTTTCAGTCAGTCAAAT
CATAAGAAATATTACATCCTGACCATGTCAAATGATGTGAAAGACAGCCT
GCTTCTGATTTATTTTCAGCGCATCCCTGGCCAGCAGAGTCTTTCCTCCC
TGTTTGGTAATTACCGATTGATGCTGAAAATTCTTTCCATGGATTAACGC
TATTGGCCTCTCTTTTAAACCCCTATCCCTTCAGGACCCTTTCTTTTTTC
TTTAGCTCGATGTGTATTAACATATTCCCCTTTCTCTTCATACCTTTACG
GTGTTTTACCGCGTACCCATTTTCTTACCTTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_j10.b1 MSMg01no355_j10.b1 CHROMAT_FILE:
MSMg01no355_j10.b1 PHD_FILE: MSMg01no355_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:05 2005
         (493 letters)



>mm_chr5_76544646_76545538
          Length = 893

 Score =  878 bits (454), Expect = 0.0
 Identities = 478/486 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccattacttactgtgactctcccaggagctctgccaggctatcagcacagatggt 64
           |||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattccattacctaatgtgactctcccagcagctctgccaggctatcagcacagatggt 264

                                                                       
Query: 65  atttgtgtttccaaaggaggaaataaaggttaagaagctacgggacttgccagtgtcact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttgtgtttccaaaggaggaaataaaggttaagaagctacgggacttgccagtgtcact 324

                                                                       
Query: 125 taggagcaggtcagaaggtcaaatcagtttcctgtggttgtggggcctctgtgggaacac 184
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 taggagcaggtcagaaggtcaaatcagtttcctgtggttgtggagcctctgtgggaacac 384

                                                                       
Query: 185 ctctgctactcaccttatcccagtgaccaagagagtccaggtagtcagggcatgggacag 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 ctctgctactcaccttatcccagtgaccaagagattccaggtagtcagggcatgggacag 444

                                                                       
Query: 245 gtgggggaggtaagaaggaagtcctaattcacaccagtcactatctgtcacctgcctgct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgggggaggtaagaaggaagtcctaattcacaccagtcactatctgtcacctgcctgct 504

                                                                       
Query: 305 ctacaaaaaggaaaccaaatgcccatttcctctgtaagaacgttcctttcaattaagccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctacaaaaaggaaaccaaatgcccatttcctctgtaagaacgttcctttcaattaagccc 564

                                                                       
Query: 365 ctcacataattcaactccgctgtgcttgagccagccttgggcacaaggtgaaagcactca 424
           |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 565 ctcacataattcaactccactgtgcttgagccagccttgggcacagggtgaaagcactca 624

                                                                       
Query: 425 aaacaggccgctgtcgtctgctcttctccgtgaggaagtcggacctcttttccagctcac 484
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 625 aaacaggccgctgtcgtctgctcttctccgtgaggaagtcggccctcttttccagctcac 684

                 
Query: 485 ccctcc 490
           ||||||
Sbjct: 685 ccctcc 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no355_j10.g1 MSMg01no355_j10.g1 CHROMAT_FILE:
MSMg01no355_j10.g1 PHD_FILE: MSMg01no355_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:05 2005
         (418 letters)



>mm_chr5_76738830_76739647
          Length = 818

 Score =  770 bits (398), Expect = 0.0
 Identities = 413/418 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagaactctgaagaaggaagatgctgctttaagacaggctctagctatgtagccaaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aaagaactctgaagaaggaagatgctgctttaagacaggctctagctatgtagccaaggc 629

                                                                       
Query: 61  tagcctcaaatggggttgttttagcctgttcttccctttctggctctatctccacagtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tagcctcaaatggggttgttttagcctgttcttccctttctggctctatctccacagtgg 569

                                                                       
Query: 121 tggacctgggagtgggaccgtggagacgaggaacacatggagagtgcctgacattcatac 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tagacctgggagtgggaccgtggagacgaggaacacatggagagtgcctgacattcatac 509

                                                                       
Query: 181 tgtgtccaagaacttgtttttaatgaggcatgctgagctctcctagaaactgggtcagcc 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgcgtccaagaacttgtttttaatgaggcatgctgagctctcctagaaactgggtcagcc 449

                                                                       
Query: 241 tcccatggcatagtctgttgctcaacatggacacagattaggtttagccctgtctctgct 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcccatggcatagtccgttgctcaacatggacacagattaggtttagccctgtctctgct 389

                                                                       
Query: 301 gatctcttagtccacctaccccccaatccccacccccaagaagtatacctagtcttcttg 360
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 388 gatctcttagtccacctaccccccaacccccacccccaagaagtatacctagccttcttg 329

                                                                     
Query: 361 ctgcttgaatttcctttctctgtgtcaaatgattcaagctcagacagtactttcagtc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctgcttgaatttcctttctctgtgtcaaatgattcaagctcagacagtactttcagtc 271


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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