Query= MSMg01no355_k20.b1 MSMg01no355_k20.b1 CHROMAT_FILE:
MSMg01no355_k20.b1 PHD_FILE: MSMg01no355_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:11 2005
(568 letters)
>mm_chr5_59885422_59886385
Length = 964
Score = 1044 bits (540), Expect = 0.0
Identities = 560/568 (98%), Gaps = 4/568 (0%)
Strand = Plus / Plus
Query: 1 gtaagaactagaataagacaatgcactccaatccaagtttattttaaattgaagatcatt 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 gtaagaactagaataagacaatgcactccaattcaagtttattttaaattgaagatcatt 260
Query: 61 gtgtatgagaactgctaaaaattaaaataccattccaaataatatattataattatcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtatgagaactgctaaaaattaaaataccattccaaataatatattataattatcatg 320
Query: 121 gctttttttttctccagactccctaaaagctcctttgataaatgactatatgtgaaataa 180
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttttttt--ctccagacttcctaaaagctcctttgataaatgactatatgtgaaataa 378
Query: 181 gatttgataacaactgaattagagcatctgaaacatatgtttgtcatttcaggcaggtcc 240
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 379 gatttgataacaactgaattagagcatctgaaacat--gtttgtcatttcaggcaggtcc 436
Query: 241 caggaggaggaaatatcccttaatgtatattctccatataaccatgtagatgatggacaa 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 437 caggaggaggaaatatcccttaatgtatattctccctataaccatgtagatgatggacaa 496
Query: 301 ttttgtgagatataaattcattcaatcatatgttagaatgtcatgaattgagatattttt 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttttgtgagatataaattcatttaatcatatgttagaatgtcatgaattgagatattttt 556
Query: 361 gaatatacacaatgctaatgagttaaggaaaattgtatctattaaataactttgtacttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaatatacacaatgctaatgagttaaggaaaattgtatctattaaataactttgtacttg 616
Query: 421 accacggtgcttcttaataccaaatcagatatgtaattgattgttcaaacacaagagaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 accacggtgcttcttaataccaaatcagatatgtaattgattgttcaaacacaagagaat 676
Query: 481 taaaccataaatctgggtgaggttaaacatttttaaagctgcatactgaagttaacagat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 taaaccataaatctgggtgaggttaaacatttttaaagctgcatactgaagttaacagat 736
Query: 541 caaaatcaattagatctgttattctgtt 568
||||||||||||||||||||||||||||
Sbjct: 737 caaaatcaattagatctgttattctgtt 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 964
Length adjustment: 10
Effective length of query: 558
Effective length of database: 954
Effective search space: 532332
Effective search space used: 532332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_k20.g1 MSMg01no355_k20.g1 CHROMAT_FILE:
MSMg01no355_k20.g1 PHD_FILE: MSMg01no355_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:11 2005
(510 letters)
>mm_chr5_60043717_60044626
Length = 910
Score = 963 bits (498), Expect = 0.0
Identities = 507/510 (99%)
Strand = Plus / Minus
Query: 1 tgggaacattacatagttgcgcaaagtggacaaatccatatctacgcccatatcttcttg 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 710 tgggaacattacatagttgcgcaaagtggacaaatccatatctaagcccatatcttcttg 651
Query: 61 acacaaatttggaggtgataaagaatactatttgtgttagtgatacattatttagataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 acacaaatttggaggtgataaagaatactatttgtgttagtgatacattatttagataat 591
Query: 121 actaaagtagaaagtaccattctagctcttcagtgcctacatgtgtgaaggtatatgttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 actaaagtagaaagtaccattctagctcttcagtgcctacatgtgtgaaggtatatgttg 531
Query: 181 gtacctgaatgtgtacatgtatgtgtttaaaactaatatctaagttataatgttttactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gtacctgaatgtgtacatgtatgtgtttaaaactaatatctaagttataatgttttactg 471
Query: 241 ttttagaagcttatctatttttctatagttatctatgtaaaattacagccttcacaaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttttagaagcttatctatttttctatagttatctatgtaaaattacagccttcacaaact 411
Query: 301 agaagcatgttccactctaattgaggccatagtaatcactgtacttctttgtgagatgct 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 agaagcatgttccactgtaattgaggccatagtaatcactgtacttctttgtgagatgct 351
Query: 361 gtagatgaaatatagatattacataatcataataagtttgaatgatgctatatactttac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtagatgaaatatagatattacataatcataataagtttgaatgatgctatatactttac 291
Query: 421 ttaaataaggaagaataatagatccatcaaaatatatcacatgattgtaatcattaagat 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 290 ttaaataaggaagaataatagatccatcaaaatataccacatgattgtaatcattaagat 231
Query: 481 tgtatgccctaaggcttatgatataaacta 510
||||||||||||||||||||||||||||||
Sbjct: 230 tgtatgccctaaggcttatgatataaacta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
