BAC Information

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BAC

Clone NameMSMg01-355L06
Chromosome5 (Build37)
Map Location 25,175,997 - 25,176,222
singlet/doubletsinglet
Overlap genenone
Upstream geneNub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11, Mll3, Gm443
Downstream geneXrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355L06.T7 (MSMg01no355_l06.b1)MSMg01-355L06.TJ (MSMg01no355_l06.g1)
ACCAG466027AG466028
length745821
length of high quality
(start - end)
529 (45 - 573)226 (78 - 303)
definitionCHROMAT_FILE: MSMg01no355_l06.b1 PHD_FILE: MSMg01no355_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:13 2005CHROMAT_FILE: MSMg01no355_l06.g1 PHD_FILE: MSMg01no355_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAGCTCTGTACCCATTTTTAAATAGGGTTATTTGTTTCTC
TGGAGTCTAACTTTGAGTTCTTTGTATAAATTGGGTATTAGCACTGTATT
GGATGTAGGATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGTTGTTTTG
TCCTATTGAAAGTGTTCTTTGCCTTACAGAAAGAACCTTTGCAATTTTAT
TAGGTTCCGTTTGTTGATTGTTGATCTTAGAGCATAAGCCATTGGTGTTC
TGTTCAGGAAAATTTCCCCTGTGCCCATGTGCTCGAGGCTCTTCCCCACT
TTCTCTTCTATTAGTTTCAGTGTACCTGGTTTTATGTGGAGATCCTGGAT
CCACTTGGACTTGAGTTTTGTACAAGGAGATAAGAATGGATCAATTCTTA
TTCTTCTACATGCTGACTGCCAGTTGAACCAGCACCAATTGTTGAAAATG
CTGTCTTTTTTGCACTGGATGGTTTTAGCTCCTTTGTCAAAGATCAAGTG
ACCATAGGTGTGTAGGTTCATTTCTGGGTCTTCAATTCTATTCAATTGAT
CTTCCTGCCCGTCTCTGTACCAATACCATACAGTTGTTTTGTTCCGCTTT
TTTTTTTACATTGATTGATTGATTGACTACATGTTATTATCTTTGTATCT
GTTTTTCTACCTTTCTTATTATTTGGTCCGATTCTTTTTTCACCG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGTTGCCCAGAATGAATTTT
GGGGAGGTATGGGGGACCTGGGAAGGAATTTTTGTAACACTTGTCTTCAG
TTAAACGTCGAGGAGTGCTGTGCCAGGATTTAAAATGTTGAGTTTTGAAG
TTGCCCTCTAGGTAGGAAGAATGAACCCCTTTAAGCATGTCCAGCACTCC
TTTCCCGCCCCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTNTT
TTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TNTCCCCTTCTTCTTCTTTCTCTCCTTCCTTTTTCCTTTCTTTTCTTTCC
TCCTTTTTCTTCTTTTTTTTCCCTTCTTTTCTCCGCCCCTTTCTCCTCCT
TCTTTTCTTTTCCTCTTTCTTTCCTCTTTCTATTTTTATTACCCCCTTTC
TTTTCTCTACTACCTCATATTTCTCTTCCCTCTTTTTTCCTTTCCTCCTT
CTCTCTCCCTTCCTTATATCTCCCTCTTTTTATCCCCTTAACTTTCCCTT
TTTTCTATCCCCTTTCCCCTTCCCTTCCATTCATACACTATCCTTTCCCA
TATATTCTTTTATTATCCCTTTCTCGTCTTCCTTCTCTACTCTCTTCCCT
TTCACCTATTTTTATCTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_l06.g1 MSMg01no355_l06.g1 CHROMAT_FILE:
MSMg01no355_l06.g1 PHD_FILE: MSMg01no355_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:14 2005
         (226 letters)



>mm_chr5_25175844_25176469
          Length = 626

 Score =  393 bits (203), Expect = e-114
 Identities = 221/227 (97%), Gaps = 2/227 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attggttgcccagaatgaattttggggaggtatgggggacctgggaaggaatttttgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 attggttgcccagaatgaattttggggaggtatgggggacctgggaaggaatttttgtaa 320

                                                                       
Query: 61  cacttgtcttcagttaaacgtcgaggagtgctgtgccaggatttaaaatgttgagttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cacttgtcttcagttaaacgtcgaggagtgctgtgccaggatttaaaatgttgagttttg 260

                                                                       
Query: 121 aagttgccctctaggtaggaagaatgaacccctttaagcatgtccagcactcctttcccg 180
           |||||||||||||||||||||||||||||||||||||||||||||| || |||| |||| 
Sbjct: 259 aagttgccctctaggtaggaagaatgaacccctttaagcatgtccaacattcctctccc- 201

                                                          
Query: 181 ccc-cctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 226
           | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cacacctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 154


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)