BAC Information

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BAC

Clone NameMSMg01-356E08
Chromosome5 (Build37)
Map Location 115,215,766 - 115,406,012
singlet/doubletdoublet
Overlap geneGit2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1
Upstream geneSart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp
Downstream geneSppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356E08.T7 (MSMg01no356_e08.b1)MSMg01-356E08.TJ (MSMg01no356_e08.g1)
ACCAG466453AG466454
length760752
length of high quality
(start - end)		429 (46 - 474)370 (73 - 442)
definitionCHROMAT_FILE: MSMg01no356_e08.b1 PHD_FILE: MSMg01no356_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:57 2005CHROMAT_FILE: MSMg01no356_e08.g1 PHD_FILE: MSMg01no356_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,405,590 - 115,406,012)(115,215,766 - 115,216,135)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCCACGTACGGCAGGGCGGACTGATTGAAGAGCCCACAGGCGAT
GAGCTGCCAACCAAGAAGGGGCGTAGGAACCGGTTCAAGTGGGGCCCCGC
ATCCCAGCAGATCCTGTTCCAGGCCTACGAGAGGCAAAAAAACCCCAGCA
AGGAAGAGCGAGAGACCTTGGTGGAGGAGTGTAATAGGTTAGCGTGGTCG
CCCATCAGGGCGGAGGCTAAGCCGGGGAAGGGAAGGTGTCTTTGGGTCGG
TCCTCAGGGGGCCTCAGCATCCTTGATTGCTCTTGGTGTTGAACCCTCCA
CCCACCTGAGGAACATTTCCCGGGCCATCCATCTCATTTCATCTCCTCTA
CAGTCCTATGGCTACTTGTTCTCAGAAAGGCTAAGTCATTTGCTCGAGGT
CCCACAGCAGAGCTGGTATTGTTATCCAGTCCTAGGGTAGACCCCACATC
TCCAGAATGTCTTCCCTCCTCCGAATCTGATTCGGAGGGTTCCGTGTTGC
CCTTTTTGCTTGTTTCAATGCCCTCCTCTATGGTGCTTCTTCTTTTGATT
TTTCATCAGATAGCTTCTCTCTCCCGCATCTGTAGTTCCTGTTTATTCTT
GTCTATCTAGGATCTTCTCCTTGCCTCTCTTCTTTTCTTTTACGTTCGCT
CTCCACCCCTTTTCACTCTTTTTTCTCTCCCTTTTTTCCCGTTTTCTCTT
CTTCCCCTTT

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAGCTGTCTGCCTGTCTCTGCCTCCTG
AATACCGGGGACTAAAAAAAGATGTGTGCCACCACACCTGGCCATGTTTT
TTATTTGGTAAAAAAAGGAAACTATTTACTCACTAGGAAAATCACTTACA
TCTGTGCAGAATTAGTATTCTGAATTGTGCACACGCTGTCTTGAGTGAGC
ATCGAGTTCAAAGCACCGCTCAAAAAACTGTGATGTGCATTTTTACGGCA
TCTCGTAGAAACAGCCAAGGCCCACAAGAAGGCACCGCTCGCGGTGTAAC
AGACACGGCTGTGCTACAGCTCTAGGTGCACTTTGCCCTCCAGCCTTGAA
CCTGGACATCTGAAGCAGTCAGCCTCCTTCCTCTGCTCTATTTCAGATGC
TAGGCTCTCTAGAAAACCTTCTTTGAAATGGCTATTATTCTCACCCAAAG
AACTTATCTTATTCTATGTGAAAACTGTACCGAAACAGTACACATTATTT
ATTTTTTCTCTTGCCCTTGACTATTATCGGGTTAAAAACTCACGTTTCCT
TAAAGCGGCTTCTTCTTTTCCTCCAATGGTGTTCCCATATTTTTTTTCCT
CCTCTTACTTTTTTTCTCTTTATTTTCCAATCACTTCTGCCCCTTTTTTC
CCCTCTTCTTCTTCCTTTGATCCTTACACCACATAGTCCCCCCCCTTTCC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_e08.b1 MSMg01no356_e08.b1 CHROMAT_FILE:
MSMg01no356_e08.b1 PHD_FILE: MSMg01no356_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:57 2005
         (429 letters)



>mm_chr5_115405438_115406266
          Length = 829

 Score =  764 bits (395), Expect = 0.0
 Identities = 416/423 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacccacgtacggcagggcggactgattgaagagcccacaggcgatgagctgcca 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gaattcacccacgcagggcagggcggactgattgaagagcccacaggcgatgagctgcca 516

                                                                       
Query: 65  accaagaaggggcgtaggaaccggttcaagtggggccccgcatcccagcagatcctgttc 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 actaagaaggggcgtaggaaccggttcaagtggggccccgcatcccagcagatcctgttc 456

                                                                       
Query: 125 caggcctacgagaggcaaaaaaaccccagcaaggaagagcgagagaccttggtggaggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 caggcctacgagaggcaaaaaaaccccagcaaggaagagcgagagaccttggtggaggag 396

                                                                       
Query: 185 tgtaataggttagcgtggtcgcccatcagggcggaggctaagccggggaagggaaggtgt 244
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tgtaataggttagcgtgatcgcccatcagggcggaggctaagccggggaagggaaggtgt 336

                                                                       
Query: 245 ctttgggtcggtcctcagggggcctcagcatccttgattgctcttggtgttgaaccctcc 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 335 ctttgggtcggtcctcagggggcctcagcatccttgagtgctcttggtgttgaaccctcc 276

                                                                       
Query: 305 acccacctgaggaacatttcccgggccatccatctcatttcatctcctctacagtcctat 364
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 275 acccacctgaggaacatttcccgggccatccatctcatttcatctcttctacagttctat 216

                                                                       
Query: 365 ggctacttgttctcagaaaggctaagtcatttgctcgaggtcccacagcagagctggtat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ggctacttgttctcagaaaggctaagtcatttgctcgaggtcccacagcagagctggtat 156

              
Query: 425 tgt 427
           |||
Sbjct: 155 tgt 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no356_e08.g1 MSMg01no356_e08.g1 CHROMAT_FILE:
MSMg01no356_e08.g1 PHD_FILE: MSMg01no356_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:57 2005
         (370 letters)



>mm_chr5_115215566_115216335
          Length = 770

 Score =  708 bits (366), Expect = 0.0
 Identities = 369/370 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagctgtctgcctgtctctgcctcctgaataccggggactaaaaaaagatgtgtgccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagctgtctgcctgtctctgcctcctgaataccggggactaaaaaaagatgtgtgccac 260

                                                                       
Query: 61  cacacctggccatgttttttatttggtaaaaaaaggaaactatttactcactaggaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacctggccatgttttttatttggtaaaaaaaggaaactatttactcactaggaaaat 320

                                                                       
Query: 121 cacttacatctgtgcagaattagtattctgaattgtgcacacgctgtcttgagtgagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacttacatctgtgcagaattagtattctgaattgtgcacacgctgtcttgagtgagcat 380

                                                                       
Query: 181 cgagttcaaagcaccgctcaaaaaactgtgatgtgcatttttacggcatctcgtagaaac 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagttcaaagcaccgctcaaaaaactgtgatgtgcatttttacggcatctcgtagaaac 440

                                                                       
Query: 241 agccaaggcccacaagaaggcaccgctcgcggtgtaacagacacggctgtgctacagctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccaaggcccacaagaaggcaccgctcgcggtgtaacagacacggctgtgctacagctc 500

                                                                       
Query: 301 taggtgcactttgccctccagccttgaacctggacatctgaagcagtcagcctccttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taggtgcactttgccctccagccttgaacctggacatctgaagcagtcagcctccttcct 560

                     
Query: 361 ctgctctatt 370
           ||||||||||
Sbjct: 561 ctgctctatt 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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