XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATA
TAGATTCTTGTATTATTAGACAGAATTATTGTTTAAACTTATTTACTTTC
TATTTTACTTGATTTTCAACAATAATATTTTATTTTCCTTTTTGATGCTA
TTTTGGAAACTGTATCCTTTTCCAATTTTTTTAACAATTTTTCCTCAAAA
CTTAAACTTAACATGTACAGAATTTCATATAATCAGGAGTTTGATTTTTT
TTATAAATACTAGCTGACTAATTTTGCTACATAATATTTTATTTGAAAGT
TCTTTATAAAATTCTGTGAATTGTTTAAAACACACACAACAGCTCTTCTC
AGCAATATATCCATTTCCACCCAGTTTTCTGGGATTTGGGGTCTGGCTTG
GTTGATATTGTTGTTCTTATGGTTCTGCAAATCCCTTCAGTTCCTTCCGT
CTGAACTTTCCCCCTACTCACCTGGAGAGGGAAATAACCCCAAGTGAAAA
CTGTTCTAGAGAATCCAGCAATTATATGTTTTGCAAAAAGTGAAGGTTTG
CACAATGACATAATCTTTGATGTGATTATTCTTTTGTGTCACTGTACTTT
GCAGTANACTCTATTTGTCCTGTTAAATAGTGGATAATTAAGGGCACGGA
CACACATGATTCCTAATAATATGCCCTGGCCCAATGGGGTCCTCTTTGTC
ATTATACAAACCCCCAACCGGCAATTGGCTAAAAATTTCCTTTCCTGCCC
CAATTTTTCATAAAAATA

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCCTGTACTGGGGCATATAAAGTTTGCAATACC
AAGGGACCTCTCTTCCCAGAGATGGCCAACTAGGCCATCAAATGCTTTCT
CTGCATCTAAGGAGATGATCATTTGATTTTTGTCTTTCAGTTTGTTTATA
TAGTGTATTACTTTGATGGATTTCCAAATATTAAATCATCCCTGCATCCC
TGGGTTGAAGCCTACTTGGTCATCATGGATGATCCTTTTGATGTGTTCTT
GTATTTGGTTTGCAAGGATTTTATTGAGCATTTTTGCATCAATATTCATA
AGGGAAATTGGTCTGAAGTTCTCTTTCTTTGTTGGATCTTTCTGTGGTTT
AGGTATCACAGTAATTGTGGCTTCTTAGACTGAATTGGGTATAGTACCTT
CTGTTTCTATTTTGTGGAATAGTTTGATAAGAGCTGGAATTACGCCTCCT
TTTATGCTCCGTTATAACTCTGTACCAATCCATTTTGGTCCTGGGGTCTT
TTTCATTCTTATCATCTTTGTTCCCTTTCATTTTTTCTCTTTACCCCTTT
CCCTTTTTTCCCAATGTCCATTTTAACTTGCTCCATTATATTTCCTTCTA
CGTCAAGCCTTTTCCTATTTTCTCTTTCTTCTTTTCTCCCACTTCTTTTT
TTATACCATTTTACTATTCAAGCTCCGGTCCCTTCTATTCCCCCTTTCTT
TCTCCTATTTTCCTTTTCGATTCTTCTCGCCTCCCATATCACN

Query= MSMg01no356_e14.b1 MSMg01no356_e14.b1 CHROMAT_FILE:
MSMg01no356_e14.b1 PHD_FILE: MSMg01no356_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:58 2005
         (539 letters)



>mm_chr5_84013978_84014916
          Length = 939

 Score =  975 bits (504), Expect = 0.0
 Identities = 528/536 (98%), Gaps = 1/536 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatatagattcttgtattattagacagaattattgtttaaacttatttactttc 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccatatagaaacttgtattattagacagaattattgtttaaacttatttactttc 263

                                                                       
Query: 65  tattttacttgattttcaacaataatattttattttcctttttgatgctattttggaaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tattttacttgattttcaacaataatattttattttcctttttgatgctattttggaaac 323

                                                                       
Query: 125 tgtatccttttccaatttttttaacaatttttcctcaaaacttaaacttaacatgtacag 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtatccttttccaattcttttaacaatttttcctcaaaacttaaacttaacatgtacag 383

                                                                       
Query: 185 aatttcatataatcaggagtttgatttttttt-ataaatactagctgactaattttgcta 243
           ||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 384 aatttcatagaatcaggagttagatttttttttataaatactagctgactaattttgcta 443

                                                                       
Query: 244 cataatattttatttgaaagttctttataaaattctgtgaattgtttaaaacacacacaa 303
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 444 cataatattttatttgaaagttctttataaaattgtgtgaattgtttaaaacacacacaa 503

                                                                       
Query: 304 cagctcttctcagcaatatatccatttccacccagttttctgggatttggggtctggctt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagctcttctcagcaatatatccatttccacccagttttctgggatttggggtctggctt 563

                                                                       
Query: 364 ggttgatattgttgttcttatggttctgcaaatcccttcagttccttccgtctgaacttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggttgatattgttgttcttatggttctgcaaatcccttcagttccttccgtctgaacttt 623

                                                                       
Query: 424 ccccctactcacctggagagggaaataaccccaagtgaaaactgttctagagaatccagc 483
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccccctattcacctggagagggaaataaccccaagtgaaaactgttctagagaatccagc 683

                                                                   
Query: 484 aattatatgttttgcaaaaagtgaaggtttgcacaatgacataatctttgatgtga 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aattatatgttttgcaaaaagtgaaggtttgcacaatgacataatctttgatgtga 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)