BAC Information

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BAC

Clone NameMSMg01-357F15
Chromosome5 (Build37)
Map Location 31,958,213 - 31,958,823
singlet/doubletsinglet
Overlap geneRbks
Upstream gene4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, LOC100040000
Downstream geneBre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357F15.T7 (MSMg01no357_f15.b1)MSMg01-357F15.TJ (MSMg01no357_f15.g1)
ACCAG467275AG467276
length758766
length of high quality
(start - end)		612 (57 - 668)439 (71 - 509)
definitionCHROMAT_FILE: MSMg01no357_f15.b1 PHD_FILE: MSMg01no357_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:19 2005CHROMAT_FILE: MSMg01no357_f15.g1 PHD_FILE: MSMg01no357_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGCCTCTCTATTCTTACTGTGGAGCCATTGTTAAACAAAATAGGGGTCCC
CTGAACAGTCCAACCATATGGCCAACCAAGTCGAATATACAAGCTGATAG
GATAAGTCAGATCCCAGGGGATCAGGACGGCATGAGGTTTGACCGCACGC
TGTGAAATGTATAACTGATGAAACTGATGATCTGTCAGGTTTTGAAATGC
AGAGGAAAAGTTTTATCTTGAGCATGCTGTCTCAAAACTCTCCTTGGTTT
TACCGAAATGAAAGCAGTTTGAGACACAGTGCTAACAGTCAAAACAAAGA
AACAACAAAACCAGTCCCAGTTGGGTCACTGTGCAGTTAGGTAGACCTGC
TGCAAGCTGATGCTGTGGCTGCTGCTGGTGAGACAGTTCATGTTGGGTCT
GGTCTTTATATCCATTTCAAAGCAAATGGAACATTACAGGGACAATTATA
AATAATTGAGATTGTCAGATCGCCAAGATTAAATCCCAGGTATGATACAA
AGTGTCTTTTAATGCCACTTTAGCCCTTTTCCATTTGGCAAGCTGAACCT
CTTGGCTGGCTGTGTAGACTTTTGCAATAACATTGTCCCACACATGGGCC
NAACTTGGAGCTGTTTTACAACTCAAGTCTCCTAAAACAAAACATAACTA
ACCACATCCTTNTAAATAAAAACCCACCCCTCCTGGTGGAGAGACAGACA
ACCTTTTT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTGTACTAACTGCATCTTGGCCACTTTGT
TTATGAAAATGAAGATGTGATCTGTCTTATTGGGTTTCTATTTCCGTGTC
GAGAGAAACCATGGCAACTCTTAAAACAGACATGGTGCTGGAGTAGCTGA
GAATTCTACATCTTTGTAGCAGGGAAAGAACTGAGACACTAGACCTGGCT
TGAGCATATGAGACCTCAAAGCCTGGCCTTCTCCAACAAAACCATGACTA
CTCTAGCAAGGCCACACCTCCATTCCCGATGAGCCTTGGTCCAGTTTCAA
ACTACCACAAGATTAAAACAGGATAGATTTAAGAGTGTTAAAGATTAATT
TGAGGGGCTGGAGAGATGGCTTAGTGGTTAAGAGCACTGGCTGCTCTTCC
AGAGGTCCTGAGTTCCAATTCCCAGCAACCACATGGTGGCTCACAACCAT
CTGTAATGGGATCTGCTGTGTCTGAAGACAGCTACAGTGTACTCATATAC
ATAAAATAAATAGGCCTTATAAAAGATTAATATCAAAAATCTATTTTAAA
ATTAACCTGGACCTCCTTAGGAAAAAGGAAAGGTTAGTCAAAATACATGA
GGGGCGGCCTTTTAAACCCGTAAATTGGGATGCAAAAAGGTTTGGGGGTT
AAAGTCTTGTTTTAAAACTAGAATTTGTCTCCCCCCTGCGGCCTGGTAGG
GTGAATAAAAATTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_f15.b1 MSMg01no357_f15.b1 CHROMAT_FILE:
MSMg01no357_f15.b1 PHD_FILE: MSMg01no357_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:19 2005
         (612 letters)



>mm_chr5_31958012_31959023
          Length = 1012

 Score = 1160 bits (600), Expect = 0.0
 Identities = 608/611 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   ctattcttactgtggagccattgttaaacaaaataggggtcccctgaacagtccaaccat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 ctattcttactgtggagccattgttaaacaaaataggggtcccctgaacagtccaaccat 753

                                                                       
Query: 62  atggccaaccaagtcgaatatacaagctgataggataagtcagatcccaggggatcagga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 atggccaaccaagtcgaatatacaagctgataggataagtcagatcccaggggatcagga 693

                                                                       
Query: 122 cggcatgaggtttgaccgcacgctgtgaaatgtataactgatgaaactgatgatctgtca 181
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ctgcatgaggtttgaccgcacgctgtgaaatgtataactgatgaaactgatgatctgtca 633

                                                                       
Query: 182 ggttttgaaatgcagaggaaaagttttatcttgagcatgctgtctcaaaactctccttgg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ggttttgaaatgcagaggaaaagttttatcttgagcatgctgtctcaaaactctccttgg 573

                                                                       
Query: 242 ttttaccgaaatgaaagcagtttgagacacagtgctaacagtcaaaacaaagaaacaaca 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttttaccgaaatgaaagcagtttgagacacagtgctaacagtcaaaacaaagaaacaaca 513

                                                                       
Query: 302 aaaccagtcccagttgggtcactgtgcagttaggtagacctgctgcaagctgatgctgtg 361
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 512 aaaccagtcccagttgggtcacagtgcagttaggtagacctgctgcaagctgatgctgtg 453

                                                                       
Query: 362 gctgctgctggtgagacagttcatgttgggtctggtctttatatccatttcaaagcaaat 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gctgctgctggtgagacagttcatgttgggtctggtctttatatccatttcaaagcaaat 393

                                                                       
Query: 422 ggaacattacagggacaattataaataattgagattgtcagatcgccaagattaaatccc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ggaacattacagggacaattataaataattgagattgtcagatcgccaagattaaatccc 333

                                                                       
Query: 482 aggtatgatacaaagtgtcttttaatgccactttagcccttttccatttggcaagctgaa 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aggtatgatacaaagtgtcttttaatgccactttagcccttttccatttggcaagctgaa 273

                                                                       
Query: 542 cctcttggctggctgtgtagacttttgcaataacattgtcccacacatgggccnaacttg 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 272 cctcttggctggctgtgtagacttttgcaataacattgtcccacacatgggccaaacttg 213

                      
Query: 602 gagctgtttta 612
           |||||||||||
Sbjct: 212 gagctgtttta 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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