MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-358B16
Chromosome	5 (Build37)
Map Location	150,646,054 - 150,646,392
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl
Downstream gene	LOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100041869 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041869
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Katnal1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231912 MGI:2387638
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	8430423G03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71473 MGI:1918723
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	1810059H22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69820 MGI:1917070
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs

name	LOC667386 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667386
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	LOC100039964 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039964
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Hmgb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15289 MGI:96113
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG667410 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667410 MGI:3647532
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 296 ESTs, 9 Proteins

name	LOC100040006 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040006
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Uspl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231915 MGI:2442342
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2310047D07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69657 MGI:1916907
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Alox5ap (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11690 MGI:107505
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	6330406I15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70717 MGI:1917967
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930588N13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75860 MGI:1923110
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 9 ESTs, 2 Proteins

name	LOC100040037 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040037
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC100040062 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040062
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	4930434E21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381693 MGI:1923042
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hsp110 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15505 MGI:105053
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG433968 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433968 MGI:3648428
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 521 ESTs, 19 Proteins

name	B3galtl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381694 MGI:2685903
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040089 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040089
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Rxfp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140498 MGI:2153463
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667470 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667470
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Fry (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320365 MGI:2443895
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 92 ESTs, 3 Proteins

name	LOC100042068 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042068
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Gm5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:194292 MGI:2684851
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	XM_359419 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545824 MGI:3690051
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 2 Proteins

name	Brca2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12190 MGI:109337
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	B230342M21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100637 MGI:2140872
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC037393 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381695 MGI:2687207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aprin (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100710 MGI:2140945
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041869 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254781 GeneID:100041869
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041869 transcript_id : XM_001477450.1

name	Katnal1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956363 GeneID:231912 MGI:2387638
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : katanin p60 subunit A-like 1 transcript_id : NM_153572.1

name	8430423G03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375855 GeneID:71473 MGI:1918723
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 8430423G03 gene transcript_id : XM_990235.1

name	LOC667386 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94375857 GeneID:667386
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical LOC667386 transcript_id : XM_990264.1

name	LOC100039964 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254749 GeneID:100039964
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100039964 transcript_id : XM_001473858.1

name	Hmgb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326547 GeneID:15289 MGI:96113
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : high mobility group box 1 transcript_id : NM_010439.3

name	EG667410 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375861 GeneID:667410 MGI:3647532
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 296 ESTs, 9 Proteins product : predicted gene, EG667410 transcript_id : XM_990406.1

name	LOC100040006 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254751 GeneID:100040006
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040006 transcript_id : XM_001473934.1

name	Uspl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85701435 GeneID:231915 MGI:2442342
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase like 1 transcript_id : NM_001013378.1

name	2310047D07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375863 GeneID:69657 MGI:1916907
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : RIKEN cDNA 2310047D07 gene transcript_id : XM_990491.1

name	Alox5ap (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33563241 GeneID:11690 MGI:107505
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : arachidonate 5-lipoxygenase activating protein transcript_id : NM_009663.1

name	6330406I15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363148 GeneID:70717 MGI:1917967
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 6330406I15 gene transcript_id : NM_027519.2

name	4930588N13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375866 GeneID:75860 MGI:1923110
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 9 ESTs, 2 Proteins product : RIKEN cDNA 4930588N13 gene, transcript variant 1 transcript_id : XM_132524.6

name	4930434E21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119508423 GeneID:381693 MGI:1923042
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930434E21 gene transcript_id : NM_029440.3

name	Hsp110 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114145504 GeneID:15505 MGI:105053
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heat shock protein 110 transcript_id : NM_013559.2

name	EG433968 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254784 GeneID:433968 MGI:3648428
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 521 ESTs, 19 Proteins product : predicted gene, EG433968 transcript_id : XM_485703.4

name	B3galtl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487080 GeneID:381694 MGI:2685903
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : beta 1,3-galactosyltransferase-like transcript_id : NM_001081204.1

name	LOC100040089 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254785 GeneID:100040089
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : hypothetical protein LOC100040089 transcript_id : XM_001474065.1

name	Rxfp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:17978287 GeneID:140498 MGI:2153463
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : relaxin/insulin-like family peptide receptor 2 transcript_id : NM_080468.1

name	Fry (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254792 GeneID:320365 MGI:2443895
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 92 ESTs, 3 Proteins product : furry homolog (Drosophila) transcript_id : XM_001477828.1

name	LOC100042068 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254794 GeneID:100042068
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042068 transcript_id : XM_001477843.1

name	Gm5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375873 GeneID:194292 MGI:2684851
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : gene model 5, (NCBI) transcript_id : XM_110552.6

name	XM_359419 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375874 GeneID:545824 MGI:3690051
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 2 Proteins product : Mus musculus sequence XM_359419 transcript_id : XM_359419.5

name	Brca2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487410 GeneID:12190 MGI:109337
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : breast cancer 2 transcript_id : NM_009765.2

name	Brca2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487408 GeneID:12190 MGI:109337
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : breast cancer 2 transcript_id : NM_001081001.1

name	B230342M21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922705 GeneID:100637 MGI:2140872
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA B230342M21 gene transcript_id : NM_133898.3

name	BC037393 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130950 GeneID:381695 MGI:2687207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC037393 transcript_id : NM_201369.2

name	Aprin (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129869 GeneID:100710 MGI:2140945
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : androgen-induced proliferation inhibitor transcript_id : NM_175310.5

name	LOC100041869 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254782 GeneID:100041869
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477500.1

name	Katnal1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956364 GeneID:231912 MGI:2387638
definition	GO_component : GO:0005874 - microtubule [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008568 - microtubule-severing ATPase activity [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 product : katanin p60 subunit A-like 1 protein_id : NP_705800.1

name	8430423G03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94375856 GeneID:71473 MGI:1918723
definition	codon_start : 1 product : hypothetical protein LOC71473 protein_id : XP_995329.1

name	LOC667386 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94375858 GeneID:667386
definition	codon_start : 1 product : hypothetical protein protein_id : XP_995358.1

name	LOC100039964 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254750 GeneID:100039964
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473908.1

name	Hmgb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754208 CCDS:CCDS19883.1 GeneID:15289 MGI:96113
definition	GO_component : GO:0000785 - chromatin [Evidence IEA]; GO:0005694 - chromosome [Evidence IEA]; GO:0005615 - extracellular space [Evidence IDA]; GO:0005634 - nucleus [Evidence TAS] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0008201 - heparin binding [Evidence IEA]; GO:0030235 - nitric-oxide synthase regulator activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006323 - DNA packaging [Evidence IEA]; GO:0006809 - nitric oxide biosynthesis [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006810 - transport [Evidence IDA] codon_start : 1 note : high mobility group protein 1 product : high mobility group box 1 protein_id : NP_034569.1

name	EG667410 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94375862 GeneID:667410 MGI:3647532
definition	codon_start : 1 product : similar to mKIAA0060 protein protein_id : XP_995500.1

name	LOC100040006 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254752 GeneID:100040006
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473984.1

name	Uspl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701436 GeneID:231915 MGI:2442342
definition	GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA] GO_process : GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : ubiquitin specific peptidase like 1 protein_id : NP_001013396.1

name	2310047D07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94375864 GeneID:69657 MGI:1916907
definition	codon_start : 1 product : hypothetical protein LOC69657 protein_id : XP_995585.1

name	Alox5ap (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33563242 GeneID:11690 MGI:107505
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_process : GO:0019370 - leukotriene biosynthesis [Evidence IEA] codon_start : 1 note : arachidonate 5 lipoxygenase activating protein product : arachidonate 5-lipoxygenase activating protein protein_id : NP_033793.1

name	6330406I15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27734078 CCDS:CCDS19884.1 GeneID:70717 MGI:1917967
definition	codon_start : 1 product : hypothetical protein LOC70717 protein_id : NP_081795.1

name	4930588N13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51711287 GeneID:75860 MGI:1923110
definition	codon_start : 1 product : hypothetical protein LOC75860 isoform 1 protein_id : XP_132524.3

name	4930434E21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119508424 GeneID:381693 MGI:1923042
definition	codon_start : 1 product : hypothetical protein LOC381693 protein_id : NP_083716.2

name	Hsp110 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114145505 CCDS:CCDS19885.1 GeneID:15505 MGI:105053
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IDA] GO_process : GO:0051085 - chaperone cofactor-dependent protein folding [Evidence IDA]; GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]; GO:0006986 - response to unfolded protein [Evidence IEA] codon_start : 1 note : heat shock protein, 105 kDa; HSP105 42 C-HSP product : heat shock protein 105 protein_id : NP_038587.2

name	EG433968 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82900057 GeneID:433968 MGI:3648428
definition	codon_start : 1 product : similar to nucleoside diphosphate kinase B protein_id : XP_485703.2

name	B3galtl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487081 GeneID:381694 MGI:2685903
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] codon_start : 1 product : beta 1,3-galactosyltransferase-like protein_id : NP_001074673.1

name	LOC100040089 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254786 GeneID:100040089
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474115.1

name	Rxfp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:17978288 CCDS:CCDS19886.1 GeneID:140498 MGI:2153463
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0016500 - protein-hormone receptor activity [Evidence IMP]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007189 - G-protein signaling, adenylate cyclase activating pathway [Evidence IMP]; GO:0008584 - male gonad development [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : G protein coupled receptor affecting testicular descent; G protein-coupled receptor 106 product : leucine-rich repeat-containing G protein-coupled receptor 8 protein_id : NP_536716.1

name	Fry (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254793 GeneID:320365 MGI:2443895
definition	codon_start : 1 product : furry homolog protein_id : XP_001477878.1

name	LOC100042068 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254795 GeneID:100042068
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477893.1

name	Gm5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82900065 GeneID:194292 MGI:2684851
definition	codon_start : 1 product : hypothetical protein LOC194292 protein_id : XP_110552.4

name	XM_359419 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82900067 GeneID:545824 MGI:3690051
definition	codon_start : 1 product : similar to zygote arrest 1-like protein protein_id : XP_359419.4

name	Brca2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487409 GeneID:12190 MGI:109337
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] [Evidence ISS]; GO:0003697 - single-stranded DNA binding [Evidence ISS] GO_process : GO:0006338 - chromatin remodeling [Evidence ISS]; GO:0006281 - DNA repair [Evidence IEA]; GO:0000724 - double-strand break repair via homologous recombination [Evidence ISS] [Evidence IDA]; GO:0006325 - establishment and/or maintenance of chromatin architecture [Evidence ISS]; GO:0007093 - mitotic checkpoint [Evidence ISS]; GO:0007090 - regulation of S phase of mitotic cell cycle [Evidence ISS]; GO:0045449 - regulation of transcription [Evidence ISS]; GO:0006974 - response to DNA damage stimulus [Evidence TAS] codon_start : 1 product : breast cancer 2 protein_id : NP_001074470.1

name	Brca2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487411 GeneID:12190 MGI:109337
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] [Evidence ISS]; GO:0003697 - single-stranded DNA binding [Evidence ISS] GO_process : GO:0006338 - chromatin remodeling [Evidence ISS]; GO:0006281 - DNA repair [Evidence IEA]; GO:0000724 - double-strand break repair via homologous recombination [Evidence ISS] [Evidence IDA]; GO:0006325 - establishment and/or maintenance of chromatin architecture [Evidence ISS]; GO:0007093 - mitotic checkpoint [Evidence ISS]; GO:0007090 - regulation of S phase of mitotic cell cycle [Evidence ISS]; GO:0045449 - regulation of transcription [Evidence ISS]; GO:0006974 - response to DNA damage stimulus [Evidence TAS] codon_start : 1 product : breast cancer 2 protein_id : NP_033895.2

name	B230342M21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78126153 CCDS:CCDS19887.1 GeneID:100637 MGI:2140872
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC100637 protein_id : NP_598659.2

name	BC037393 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41235761 CCDS:CCDS19888.1 GeneID:381695 MGI:2687207
definition	codon_start : 1 note : protein from BCRA2 region product : hypothetical protein LOC381695 protein_id : NP_958757.1

name	Aprin (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:66955886 GeneID:100710 MGI:2140945
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0042127 - regulation of cell proliferation [Evidence ISS] codon_start : 1 product : androgen-induced prostate proliferative shutoff associated protein AS3 protein_id : NP_780519.3

name	LOC100040037 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040037
definition	number : 3 pseudo : _no_value

name	LOC100040037 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040037
definition	number : 2 pseudo : _no_value

name	LOC100040037 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040037
definition	number : 1 pseudo : _no_value

name	LOC100040062 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040062
definition	number : 1 pseudo : _no_value

name	LOC667470 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667470
definition	number : 1 pseudo : _no_value

name	LOC667470 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667470
definition	number : 2 pseudo : _no_value

name	LOC667470 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667470
definition	number : 3 pseudo : _no_value

name	1810059H22Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149254748 GeneID:69820 MGI:1917070
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs product : RIKEN cDNA 1810059H22 gene transcript_id : XR_035221.1

clone name	MSMg01-363K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294F02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-526M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501I20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-516A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325I08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-516A14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-159M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398E19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-147C17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-365K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330C21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187A12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228O15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178C24
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-358B16.T7 (MSMg01no358_b16.b1)	MSMg01-358B16.TJ (MSMg01no358_b16.g1)
ACC	AG467840	AG467841
length	711	755
length of high quality (start - end)	457 (40 - 496)	173 (68 - 240)
definition	CHROMAT_FILE: MSMg01no358_b16.b1 PHD_FILE: MSMg01no358_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:17 2005	CHROMAT_FILE: MSMg01no358_b16.g1 PHD_FILE: MSMg01no358_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:17 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC TGTTTTTTGTTTTTTTTGTTTCTTTTTTTTTAATTTGCTTCAACCCTGCC AGGTCTTCTGTCTGATGGCACAGTCCACTTGCCCATTACATTGCCATAAC GGGAGTGCACCAGATGGCTTTTTATCAACTGGAAACTAACTAGACTCATC TGAGAATGGGGAGCCTCAGCTGAGAAAATGCTTCCATCAGATCAGCCCAT AGGCAAATCTGTGGGCAGTTCGCGATTGATGTTTGACCTCGAAGGGCCCA GCCCGCTGTGGGTGGTGCTACTCCAAGGCAGGTAGACCTGGATTGTGTAA GAAAGCAGGCTGAGCAAGCCAGTAAGCAGGGCTCCTCAATGGTCTGGGCT TTCAGTTCCTGCTTCCTGGTTACTGCTTGAGTCCCCCGCCCTTGCATCAA GGTTGGACGATAAACTTAAGATGAATTAAGCCCTCTCCTCCCCAGGCTGC TTTTAATTGTGGGCTTTACTACAGCAACAGAGAGAGAGCTGGCTAGCACA GGGAACAAGAACAAGGCTCAGCTACCTGGGAAAACCAGCCCAAAGGCCTC CTAAATCAGGCCCGACGAAAAAAACGGCTTCCATTGTTTTTTATAAATGA ACGAAGGTGGACCCCTGAATAAAGACACATCCCCCCTGGACCCCGGTGGA AAACCCTCAAA	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXTGGAGAGGTGGTGGCTCAGTGGTTAAGAGGATC TGAGTTCAAATCCCAGCACCCATGTCTAGAGGCCCATAGTCGCCTGTAAC ATTAGCTCAAGGGGTTCTGATGTCCCTGCCCAAGTGATGCTCCTTGCACT CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNNNNNTTNNNNN TNTNNNNNTNNTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTNNTTTTTCTT TTTTNTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC TTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT CTTTTTCTTTTTTTTTTTTTTTTTTTCTTTTTTTTTCNNTTTTTTTCTTT TTTTCTTTCTCTTCTTTTTCCCCCCTTTTTTTCCACTTTTTCTTTATTTT TTTTTTTCTTTATTATTCTTCTCTTTCTTCTATCTCTTCACTTCTACTAC TATTCTATCTATAATTATATATATTCATATTTTACTTCTTTCATCCTTCT CTCTCCCGTCTTTATGTTTTTTTTTGATTTCTTTCCTTCTTATTACTTCT TCTTG
quality values	Open. Hide. 23 23 23 27 12 10 10 23 18 22 30 21 22 11 10 10 23 30 48 32 32 32 32 32 39 59 59 57 48 48 48 48 57 59 29 29 19 16 16 42 41 68 68 42 42 41 41 41 43 57 57 48 59 59 68 57 48 42 32 32 35 42 59 68 68 50 50 41 41 41 50 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 57 54 54 54 57 59 59 59 50 50 50 50 50 50 59 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 68 68 68 68 68 59 68 68 57 57 57 57 57 68 68 68 68 68 57 57 52 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 59 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 57 59 68 68 68 68 68 68 59 59 59 68 68 57 57 57 57 57 57 59 68 59 68 68 68 57 57 47 57 57 57 57 50 47 48 48 54 54 54 59 59 59 59 59 57 57 57 57 57 57 59 57 54 54 48 48 48 57 57 57 57 43 43 43 57 57 59 59 59 59 59 59 59 59 59 59 47 47 41 41 41 37 34 32 41 41 59 59 59 59 59 59 48 48 43 43 37 43 47 59 47 48 47 47 47 59 59 41 39 31 31 35 37 39 34 47 46 46 48 43 41 39 39 39 59 59 36 59 37 35 31 36 37 37 37 37 31 37 39 37 37 35 36 31 31 31 29 29 32 37 37 39 40 40 59 59 47 43 30 24 12 21 11 19 19 25 25 32 32 27 28 39 27 27 22 30 31 31 24 24 30 30 34 30 21 14 14 18 28 32 20 20 20 11 9 8 8 8 8 12 12 12 12 15 13 11 8 8 8 10 19 18 29 23 20 20 20 19 15 15 12 12 11 11 11 12 11 12 12 13 12 12 12 10 12 10 10 10 16 10 10 8 8 8 8 10 10 11 11 11 10 10 10 9 9 9 9 9 10 10 16 10 10 10 9 9 9 11 10 8 8 9 10 13 9 9 8 8 8 8 8 9 14 20 18 24 21 13 12 11 8 8 7 7 7 8 11 8 8 8 8 9 8 8 9 8 8 8 8 8 11 15 13 10 11 11 13 10 9 9 9 9 8 8 8 8 8 7 8 8 10 19 16 16 11 11 11 17 9 9 9 7 6 6 6 6 8 8 8 8 11 11 8 8 8 9 8 8 9 8 8 6 6 8 8 8 11 8 8 8 10 10 10 10 10 11 15 14 13 9 7 10 9 8 8 8 10 10 10 11 11 11 8 10 8 8 8 8 8 8 12 12 9	Open. Hide. 8 8 9 7 7 8 15 16 39 39 39 47 47 39 39 39 39 39 44 44 39 36 29 14 10 9 10 10 15 19 18 20 21 29 30 59 59 50 53 36 36 36 36 36 43 47 57 57 57 57 57 43 42 34 42 42 42 42 42 42 43 40 41 42 42 42 43 51 50 50 68 68 50 51 50 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 51 57 68 68 51 51 50 47 47 50 57 51 51 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 47 47 39 23 23 3 0 0 0 0 0 0 3 3 0 0 0 0 0 3 0 3 0 0 0 0 0 3 0 0 3 8 6 9 9 9 10 10 12 10 13 3 0 0 3 6 6 8 8 8 8 8 10 7 9 9 7 7 6 6 8 9 10 10 10 10 11 8 8 10 10 14 12 14 15 22 24 22 25 20 16 19 19 15 10 10 15 13 13 8 8 8 8 10 10 8 12 9 8 6 7 7 6 10 8 8 8 10 10 10 9 9 9 9 9 9 10 10 14 14 14 21 21 24 16 16 3 0 3 9 9 9 9 9 9 10 12 9 9 9 9 9 10 10 10 10 9 8 6 6 7 7 3 0 3 9 9 9 3 0 0 3 8 8 9 12 13 13 10 9 9 9 3 0 3 8 10 8 8 3 0 3 11 8 8 8 8 10 8 10 8 8 8 8 8 8 10 10 12 13 11 11 12 11 9 9 7 7 6 9 9 10 10 10 10 10 10 10 10 10 9 9 9 8 8 10 10 14 10 10 8 8 8 10 10 8 8 6 7 8 9 7 7 6 6 6 8 8 9 13 17 10 10 10 10 8 6 8 7 6 6 10 9 9 9 11 14 12 10 12 10 8 9 9 13 18 14 17 12 12 13 10 9 9 9 10 8 8 7 8 8 14 14 15 10 6 6 6 8 10 9 8 10 12 12 3 0 0 3 9 9 22 15 15 10 10 8 8 10 9 8 10 10 11 11 11 8 8 8 8 8 10 10 10 8 8 8 8 8 10 9 9 9 9 9 15 18 10 10 9 11 8 8 8 8 8 12 15 9 10 10 8 8 7 7 13 12 24 10 10 9 9 10 12 12 12 10 8 8 8 10 8 10 16 22 9 9 9 16 11 11 11 16 11 13 12 12 10 10 11 13 11 11 8 8 8 8 8 10 10 10 8 8 10 13 8 8 8 8 8 8 8 8 8 11 8 8 8 8 7 6 6 6 6 8 6 10 8 8 8 6 6 8 8 9 9 9 8 8 8 8 8 7 9 9 10 12 16 16 12 11 11 8 8 6 6 8 8 13 8 8 8 12 8 9 12 10 13 10 10 10 8 8 8 8 8 19 20 30 18 19 9 6 6 6 6 8 6 6 6 6 12 10 12 7 6 8 8 11 8 10 13 8 8 8 8 8 10 10 10 10 8 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no358_b16.b1 MSMg01no358_b16.b1 CHROMAT_FILE:
MSMg01no358_b16.b1 PHD_FILE: MSMg01no358_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:17 2005
         (457 letters)



>mm_chr5_150646054_150646909
          Length = 856

 Score =  617 bits (319), Expect = 0.0
 Identities = 332/339 (97%), Gaps = 5/339 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgttttttgttttt-----tttgtttctttttttttaatttgcttcaaccctg 59
           ||||||||||||||| |||||     ||||||||||||||||||||||||||||||||||
Sbjct: 339 gaattcctgttttttttttttgtttgtttgtttctttttttttaatttgcttcaaccctg 280

                                                                       
Query: 60  ccaggtcttctgtctgatggcacagtccacttgcccattacattgccataacgggagtgc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ccaggtcttctgtctgatggcacagtccacttgcccattacattgccataacgggagtgc 220

                                                                       
Query: 120 accagatggctttttatcaactggaaactaactagactcatctgagaatggggagcctca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 219 accagatggctttttatcaactggaaactaactagactcatctgagaatggggagtctca 160

                                                                       
Query: 180 gctgagaaaatgcttccatcagatcagcccataggcaaatctgtgggcagttcgcgattg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gctgagaaaatgcttccatcagatcagcccataggcaaatctgtgggcagttcgcgattg 100

                                                                       
Query: 240 atgtttgacctcgaagggcccagcccgctgtgggtggtgctactccaaggcaggtagacc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  atgtttgacctcgaagggcccagcccgctgtgggtggtgctactccaaggcaggtagacc 40

                                                  
Query: 300 tggattgtgtaagaaagcaggctgagcaagccagtaagc 338
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  tggattgtgtaagaaagcaggctgagcaagccagtaagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 856
Length adjustment: 10
Effective length of query: 447
Effective length of database: 846
Effective search space:   378162
Effective search space used:   378162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information