BAC Information

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BAC

Clone NameMSMg01-358K20
Chromosome5 (Build37)
Map Location 36,111,305 - 36,278,445
singlet/doubletdoublet
Overlap geneAblim2, Afap1, LOC100040209
Upstream geneHdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1
Downstream geneSorcs2, 2310020A21Rik, Grpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358K20.T7 (MSMg01no358_k20.b1)MSMg01-358K20.TJ (MSMg01no358_k20.g1)
ACCAG468276AG468277
length727737
length of high quality
(start - end)		476 (36 - 511)470 (65 - 534)
definitionCHROMAT_FILE: MSMg01no358_k20.b1 PHD_FILE: MSMg01no358_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:00 2005CHROMAT_FILE: MSMg01no358_k20.g1 PHD_FILE: MSMg01no358_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,111,305 - 36,111,777)(36,277,976 - 36,278,445)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGTC
CTGTATCTTTGGCCTGGTCTTTTTGGGCCTTCCTTTGTCATGCCAATGAA
AGCCATAACCCCACATTCTGCACTGCTGTGACGCCAGCATCCCACGGACA
GTGCGAGATCTGTGAGCAGAAGGGGTTGTTTCAGGGCTGGCTTGGACCAC
AACTGCTGCAATGGCTTCTGGGTGCCTTGTTGGCCCAACTTAGGTGGCCT
GAGACACACTGAGCACCCTGGTGCCCTTTCAAGGAAGCATTCTGTCCTGG
AAATTCTCTGAGACAGCTTTGCCTCGTTTGTGTCTGGTCTCTGTGCCTAT
GGTGTCTCTGCAGACACTTGCCTCTCTCTCAGGAACCGCAGGCATAAGAT
GCCAGGGAGTTAGCAGCCATACCCTCCGGCTAATATTTTTCCCAGGCTCC
TTCTGCCCACGCTGAACTTTCCAGCTTTCTCTGCTTGCTCCTCTTTGCTC
CTCCTTCTTGTTGTAAATCTGGCGAAATGCAGCCAGCAGTTTCCACGCTC
CAGCTAGAGATGCCCTTGCCAGAGCCTGACTGTTGTGTTGCCATGACATG
GTCTCTGTCCAATAAACAGCCTGGCCTCTCCAAGGTGTCGGGAATTGACA
AAAAAGCCCTGTTCCTCCCGAGGATAAACAGGGAAGCCCCCTTCGGGAAA
AACACCGGTTCCTCCCAAGTATCCCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATGGATGGGATAGTGTCAGAGGATGCATGGGAAGAG
AACAAATCAAGTTTAGAAACAGGTGGGGTAATGAGAATTTGGAACCCTGG
GAATCTGGACCAAGGACCTGTGGGACTCACCCTTGGATGACTGCAGGCGC
AGCAGGATGTTGGTGAGCACAGCCTTTTTCTCTCTGACAGTTGATGTGAG
GTACTCGTGGTCCAGGAGCTCCAGAAAGAGGCGGAGTTCAACTATTAACT
CTTCCATTGCTGGAAAGAAAGGAGAGAGGAAGAAGGAGACCGATCGTCAG
TCAGGCTGAGGGTTTGCAGATGACAGAACAGGACTGTGAGCTTCCCTTCA
GTGGCTCAAGTTCAGTCCGATCACACGATGACATATTGTACATTTGAACA
CAAGAAGCCAGAATGCTAAGCCAGGCCCTCTACACGCTCATGATCTTCCT
AACACATGTATGGCTCCTTCATCCTTACTTCCAGGCAGCAAAGCTCAACG
GGAGAAGAGTTAGAGCCCAAGCCCACAGATGGAGGGGGCCTCAAGTAGAT
AGCATTCTTTGTCATGGGGTGAAACTGAATCTCCCGGGCCCCAAGAGATC
CCAGAATAAACACTCGGGTTCCTTTTTCTTTTTTTTTTGGTAAAAATTTT
CTTTTTTTTTAAAAAAATTTATTAATTAATTATTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_k20.b1 MSMg01no358_k20.b1 CHROMAT_FILE:
MSMg01no358_k20.b1 PHD_FILE: MSMg01no358_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:00 2005
         (476 letters)



>mm_chr5_36111102_36111977
          Length = 876

 Score =  876 bits (453), Expect = 0.0
 Identities = 468/473 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagtcctgtatctttggcctggtctttttgggccttcctttgtcatgccaatg 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagtcctgtaactttggcctggtctttttgggccttcctttgtcatgccaatg 263

                                                                       
Query: 64  aaagccataaccccacattctgcactgctgtgacgccagcatcccacggacagtgcgaga 123
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 264 aaagccataaccccacattctgcactgctgtgacaccagcatcccacggacagtgcaaga 323

                                                                       
Query: 124 tctgtgagcagaaggggttgtttcagggctggcttggaccacaactgctgcaatggcttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctgtgagcagaaggggttgtttcagggctggcttggaccacaactgctgcaatggcttc 383

                                                                       
Query: 184 tgggtgccttgttggcccaacttaggtggcctgagacacactgagcaccctggtgccctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgggtgccttgttggcccaacttaggtggcctgagacacactgagcaccctggtgccctt 443

                                                                       
Query: 244 tcaaggaagcattctgtcctggaaattctctgagacagctttgcctcgtttgtgtctggt 303
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 444 tcaaggaagcattctgtcctggaagctctctgagacagctttgcctcgtttgtgtctggt 503

                                                                       
Query: 304 ctctgtgcctatggtgtctctgcagacacttgcctctctctcaggaaccgcaggcataag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctctgtgcctatggtgtctctgcagacacttgcctctctctcaggaaccgcaggcataag 563

                                                                       
Query: 364 atgccagggagttagcagccataccctccggctaatatttttcccaggctccttctgccc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atgccagggagttagcagccataccctccggctaatatttttcccaggctccttctgccc 623

                                                                
Query: 424 acgctgaactttccagctttctctgcttgctcctctttgctcctccttcttgt 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acgctgaactttccagctttctctgcttgctcctctttgctcctccttcttgt 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no358_k20.g1 MSMg01no358_k20.g1 CHROMAT_FILE:
MSMg01no358_k20.g1 PHD_FILE: MSMg01no358_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:00 2005
         (470 letters)



>mm_chr5_36277776_36278645
          Length = 870

 Score =  886 bits (458), Expect = 0.0
 Identities = 467/470 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggatgggatagtgtcagaggatgcatgggaagagaacaaatcaagtttagaaacaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 atggatgggatagtgtcagaggatgcatgggaagagaacaaatcaagtttagaaacaggt 611

                                                                       
Query: 61  ggggtaatgagaatttggaaccctgggaatctggaccaaggacctgtgggactcaccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ggggtaatgagaatttggaaccctgggaatctggaccaaggacctgtgggactcaccctt 551

                                                                       
Query: 121 ggatgactgcaggcgcagcaggatgttggtgagcacagcctttttctctctgacagttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ggatgactgcaggcgcagcaggatgttggtgagcacagcctttttctctctgacagttga 491

                                                                       
Query: 181 tgtgaggtactcgtggtccaggagctccagaaagaggcggagttcaactattaactcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tgtgaggtactcgtggtccaggagctccagaaagaggcggagttcaactattaactcttc 431

                                                                       
Query: 241 cattgctggaaagaaaggagagaggaagaaggagaccgatcgtcagtcaggctgagggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cattgctggaaagaaaggagagaggaagaaggagaccgatcgtcagtcaggctgagggtt 371

                                                                       
Query: 301 tgcagatgacagaacaggactgtgagcttcccttcagtggctcaagttcagtccgatcac 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 370 tgcagatgacagaacaggactgtgagcttcccttcagtggctcacgttcagtccgatcac 311

                                                                       
Query: 361 acgatgacatattgtacatttgaacacaagaagccagaatgctaagccaggccctctaca 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 310 acgatgacatattgtacatttgaacacaagaagccagaatgctaagtcaggccctctgca 251

                                                             
Query: 421 cgctcatgatcttcctaacacatgtatggctccttcatccttacttccag 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cgctcatgatcttcctaacacatgtatggctccttcatccttacttccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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