BAC Information

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BAC

Clone NameMSMg01-358M23
Chromosome5 (Build37)
Map Location 42,669,735 - 42,670,119
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
Downstream geneEG636612, LOC433883, EG665934, Cpeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358M23.T7 (MSMg01no358_m23.b1)MSMg01-358M23.TJ (MSMg01no358_m23.g1)
ACCAG468376AG468377
length739748
length of high quality
(start - end)		474 (38 - 511)385 (68 - 452)
definitionCHROMAT_FILE: MSMg01no358_m23.b1 PHD_FILE: MSMg01no358_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:10 2005CHROMAT_FILE: MSMg01no358_m23.g1 PHD_FILE: MSMg01no358_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
CCTGATGACTACCGAATGGTAGAGAAGCACCTGAAAAAAAATGTTCAGCA
TCCTTAATCATCAGGAAAATGCAAATCAAAACAACCCTGAGATTCCATCT
CATACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAGAGCAGATGCT
GGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGC
AAGTTTGTACAACCACTCTGGAAATCAGTTTGGTGGTTCCTCAGAAAATT
GGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGCATATATC
CAGAAGATGTTCCAACTGGTAAGAAAGATACATGCTCCACTATGTTCATA
GCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTC
AACAGAGGAATAGATACAAAAATGTGGTACATTTACACAATGGAGTACTA
CTCGGCTATTAAAAAGAATGAATTTATTAAATTCCTAGGCAAATGGTTGG
ACCTGGAGGGCATCATTCGAGTGGGGGAACCCAATCACAAAGAAATCAAA
TGATATGTTCCCACTGATAAACGGATATAAGCCCCGAAACTTTAAATACC
CCCGAAATTAGATAACATTTGAAAACCCTTGAAACTCCGAAGAACCAAGA
CCAAAGGGGGGGACCTTTGGCCCTTCTTAAAATGGGAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGATGGGAATCTAATGCTGAAAACATCTAGAGA
ATCTGAGCTTCCCTGGCCTCTCAATTCCACACCATGTGATGGAAGGGCTA
ATATGTAAAGGGACTGTGATTTGCTTTAACCAACCCAGATACCCTTGTCT
GACAGACGGAGCCTTTTGAAATGAAAATCTGAAGAGTATAGAAAAACAAA
ATATCCCCTTGTGGTGGGATTTTCTAGGTGAGAATATCTGATCCAGAGGA
AGGTTCCTGTGAATTCTATGCCTGCTCACTTAAAAAATTAGCTTTACACA
TTCCTGAATCAAAACACTTGCAGATATGTCACATCACGACCCACAAGGGG
GTTGTAAAGATGACAATTCCTCAAGCTTATGTCTTTTTCTGTCTTTATGG
GTGTGCTGAACAAGACCTCTTGAGTGTAGGGATAATGACATATACGTTCA
CGGTCTGACTTTTTATGCTCAGAGTAACCCCCTTCCTCCCTTGTTAAGTT
AACCCGTTTCCTCTAAAAAACTTAAAAAATTGGGGCCCCGGATCCAATTT
CCCCTTTTAAAATTATTTAGAAAAAAAAAAAATCCAATTTTTTTTTTCCC
CTCCCACCCCAAAATTTTCCATCCATTGCCCCCCCCGGATCCTATTTAAA
ATCAGGGCCCCCTTTTCTTTTATTTATTGTTGGAACCTCCCTTTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_m23.g1 MSMg01no358_m23.g1 CHROMAT_FILE:
MSMg01no358_m23.g1 PHD_FILE: MSMg01no358_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:10 2005
         (385 letters)



>mm_chr5_42669535_42670319
          Length = 785

 Score =  737 bits (381), Expect = 0.0
 Identities = 384/385 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgggaatctaatgctgaaaacatctagagaatctgagcttccctggcctctcaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 agatgggaatctaatgctgaaaacatctagagaatctgagcttccctggcctctcaattc 526

                                                                       
Query: 61  cacaccatgtgatggaagggctaatatgtaaagggactgtgatttgctttaaccaaccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 cacaccatgtgatggaagggctaatatgtaaagggactgtgatttgctttaaccaaccca 466

                                                                       
Query: 121 gatacccttgtctgacagacggagccttttgaaatgaaaatctgaagagtatagaaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gatacccttgtctgacagacggagccttttgaaatgaaaatctgaagagtatagaaaaac 406

                                                                       
Query: 181 aaaatatccccttgtggtgggattttctaggtgagaatatctgatccagaggaaggttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aaaatatccccttgtggtgggattttctaggtgagaatatctgatccagaggaaggttcc 346

                                                                       
Query: 241 tgtgaattctatgcctgctcacttaaaaaattagctttacacattcctgaatcaaaacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tgtgaattctatgcctgctcacttaaaaaattagctttacacattcctgaatcaaaacac 286

                                                                       
Query: 301 ttgcagatatgtcacatcacgacccacaagggggttgtaaagatgacaattcctcaagct 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ttgcagatatgtcacatcacaacccacaagggggttgtaaagatgacaattcctcaagct 226

                                    
Query: 361 tatgtctttttctgtctttatgggt 385
           |||||||||||||||||||||||||
Sbjct: 225 tatgtctttttctgtctttatgggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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