XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGGCGGAATTCCTTAGCT
TTCCCGAAACAGAAAACCAGTGTGTCCTGCCGCAGGCTAGACCCTCTGCT
CTGTGAACATGTGCGCAGCTCCTCAAAGCAGACATGTCTGCAGAGCACAT
TGCTGCTTCCTTTCCTAGGCATTGTCGCCCTGTGCTTTCTGCTCTCTAAT
CATTACATGGGAAAAGATGACACAGAGCTTCAGGAGCTGATGCAGGAGGA
TCAGGGGTTGGATGTTAGCTGGAGTCATACAGAACCCATCGTGTGGGTTG
GGGAGAAAATTTTAAAAGAGGGAAGGATCTCACCTGCCCCAAAACCGACC
ACTGTCCTGCACCCACGGAGTTGGGGGGGGGGGTGTCTTTCAATAAATAT
ATTATACTCTCCAAGTTAATTTAGTTGTTTCAGGTCGTAGAAACTTATTT
ATGTGCCCCTGTCCCTTGCTTTGTACCCCCGTTTTTATTCTCTTTTTTCT
AGTTGATCTTTTCCCTGAGTCCCACTTTTTTCCCCTTTTTCTCATCTTTT
TCTTATTTTTTTCAACTTATTTTAATAATTTTTTCGACCCGCCCCTTTCC
ACTTATTTTTTCTTTCCCCCCCGCCTGTTTTCCTAATTTCCTAATCTTTA
TTACCTTTTATAACTATTTTTTCACCATCATTCGCCCCCTCCCCCCCAAA
TAAGAAATGTCCCCACACTAATTTATTTAACCTATATCCACTCTCTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXATTAACTATCACCTCACGTTCCACGAACTCCCAAATCCA
ACCAGGAAAGCTAGACAAAGCATACTAGGGTTCCCAACTCCACGACAGAC
TCATGGTCCCATTCACTCCATGTGAAGCCCAAGGCATCAGAAAAAACAGA
ACATCCTGTCTGTCAGCCCCAGGAAAATGCTTTTCCCATGCCTCAGGGTC
AAAAAAAGAAAAAACCTTTCAGCCCAAAGACTCCTTAAATACCTATCAGC
ACATTAGAAGAAAAAGTAATTTTAAATCTTGGAGCTCAAATACGGGGTGG
CAGGGAGGAGGGAAAGGACAAGAGGCTTGGGACTTCCTCGGAGTCAGTTA
ACAGTTCCCCCAGGTCATCTGCTATCTGAGGGGGCTTGGGGCAGGTTCTG
GAGCATAGCTCTCCACGTGTCTTTAAAGCAGCGAGCTTTACAGAGACCCT
CAAAGGCAACTTGGCCCTAGCATGCTTTTCCGACCCAGTTTATCTCACCC
AGAGCAAGCGTCAGCCCAGGTAGATGAGACCACAAACCCGAAACGGATGT
CTGACAGCCATCTGAGTCCTAGGGGATGAGAGTTCTGCGAAGAGTCCAGA
ACTCTCCCCAGAGAGGTTAAAGATGACAAGAAAGATGTAGATTTCTATCC
ACACAGCTCGTCCCCAAACTGT

Query= MSMg01no358_o01.b1 MSMg01no358_o01.b1 CHROMAT_FILE:
MSMg01no358_o01.b1 PHD_FILE: MSMg01no358_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:15 2005
         (328 letters)



>mm_chr5_111684207_111684934
          Length = 728

 Score =  536 bits (277), Expect = e-157
 Identities = 304/317 (95%), Gaps = 8/317 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgtgtcctgccgcaggctagaccctctgctctgtgaacatgtgcgcagctcctcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgtgtcctgccgcaggctagaccctctgctctgtgaacatgtgcgcagctcctcaaa 260

                                                                       
Query: 61  gcagacatgtctgcagagcacattgctgcttcctttcctaggcattgtcgccctgtgctt 120
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 gcagacacgtctgcagagcacattgctgcttcctttcctaggcattgtcgccctgtactt 320

                                                                       
Query: 121 tctgctctctaatcattacatgggaaaagatgacacagagcttcaggagctgatgcagga 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tctactctctaatcattacatgggaaaagatgacacagagcttcaggagctgaggcagga 380

                                                                       
Query: 181 ggatcaggggttggatgttagctggagtcatacagaacccatcgtgtgggttggggagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatcaggggttggatgttagctggagtcatacagaacccatcgtgtgggttggggagaa 440

                                                                       
Query: 241 aatttt----aaaagagggaaggatctcacctgccccaaaaccgaccactgtcctgcacc 296
           ||        ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aa----gcagaaaagagggaaggatctcacctgccccaaaaccgaccactgtcctgcacc 496

                            
Query: 297 cacggagttgggggggg 313
           ||| |||||||||||||
Sbjct: 497 cacagagttgggggggg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no358_o01.g1 MSMg01no358_o01.g1 CHROMAT_FILE:
MSMg01no358_o01.g1 PHD_FILE: MSMg01no358_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:15 2005
         (502 letters)



>mm_chr5_111857347_111858248
          Length = 902

 Score =  963 bits (498), Expect = 0.0
 Identities = 501/502 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaactatcacctcacgttccacgaactcccaaatccaaccaggaaagctagacaaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 attaactatcacctcacgttccacgaactcccaaatccaaccaggaaagctagacaaagc 643

                                                                       
Query: 61  atactagggttcccaactccacgacagactcatggtcccattcactccatgtgaagccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 atactagggttcccaactccacgacagactcatggtcccattcactccatgtgaagccca 583

                                                                       
Query: 121 aggcatcagaaaaaacagaacatcctgtctgtcagccccaggaaaatgcttttcccatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aggcatcagaaaaaacagaacatcctgtctgtcagccccaggaaaatgcttttcccatgc 523

                                                                       
Query: 181 ctcagggtcaaaaaaagaaaaaacctttcagcccaaagactccttaaatacctatcagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ctcagggtcaaaaaaagaaaaaacctttcagcccaaagactccttaaatacctatcagca 463

                                                                       
Query: 241 cattagaagaaaaagtaattttaaatcttggagctcaaatacggggtggcagggaggagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cattagaagaaaaagtaattttaaatcttggagctcaaatacggggtggcagggaggagg 403

                                                                       
Query: 301 gaaaggacaagaggcttgggacttcctcggagtcagttaacagttcccccaggtcatctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gaaaggacaagaggcttgggacttcctcggagtcagttaacagttcccccaggtcatctg 343

                                                                       
Query: 361 ctatctgagggggcttggggcaggttctggagcatagctctccacgtgtctttaaagcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ctatctgagggggcttggggcaggttctggagcatagctctccacgtgtctttaaagcag 283

                                                                       
Query: 421 cgagctttacagagaccctcaaaggcaacttggccctagcatgcttttccgacccagttt 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 282 cgagctttacagagaccctcaaaggcaacttggccccagcatgcttttccgacccagttt 223

                                 
Query: 481 atctcacccagagcaagcgtca 502
           ||||||||||||||||||||||
Sbjct: 222 atctcacccagagcaagcgtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)