Query= MSMg01no359_d14.b1 MSMg01no359_d14.b1 CHROMAT_FILE:
MSMg01no359_d14.b1 PHD_FILE: MSMg01no359_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:40 2005
(497 letters)
>mm_chr5_132355622_132356517
Length = 896
Score = 884 bits (457), Expect = 0.0
Identities = 487/499 (97%), Gaps = 6/499 (1%)
Strand = Plus / Plus
Query: 1 ttcagaaatacctgccctggagctgcctatggtggactgggtcctccttcaacagttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttcagaaatacctgccctggagctgcctatggtggactgggtcctccttcaacagttaaa 261
Query: 61 aatcaagacaatgtcccaaagacatgctgacagggcagtctcagctaggccattactcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aatcaagacaatgtcccaaagacatgctgacagggcagtctcagctaggccattactcaa 321
Query: 121 ttaagacaagttttgtcaagaggaaagttaaagctatgtatgtctctcatttttaaattt 180
||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct: 322 ttaagacaagttttgtcaagaggaaagttaaggctacgtatgtctctcattttttaattt 381
Query: 181 aatttaattttttgtggtgtgtgtgt--ctgtacatgggcatgcacacatgcatgagtgt 238
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 382 aattt---tttttgtggtgtgtgtgtgtctgtacatgggcatgcacacatgcatgagtgt 438
Query: 239 gaagaacatgccatagcatgaatatggaactcaactccatggcaacagcatgggtatcaa 298
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 439 gaagaacatgccatagcatgaatatggaactcaactccatggcaacagcatgagtatcaa 498
Query: 299 ctccatggcaacaattcttctcaactatgtgggtttcagcaactgaactcaagtcttcag 358
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 499 ctccatggcaacaattcttctcaactatgtgggtttcagcaactgaactaaagtcttcag 558
Query: 359 gtttgcacagcaagtattttggttctctgtgccagcactctccggtcttttaaaaccttt 418
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 559 gtttgcacagcaagtattttggttctctgtgccagcactctccggt-ttttaaaaccttt 617
Query: 419 cctccttttagacaggattgtaaagacaccaagcttgagcgggtgctgagtgaagaatgt 478
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 618 cctccttttagacaggattgtaaagacaccaagcttgagcgggtactgagtgaagaatgt 677
Query: 479 tctttgggagctaggaaga 497
|||||||||||||||||||
Sbjct: 678 tctttgggagctaggaaga 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space: 431482
Effective search space used: 431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_d14.g1 MSMg01no359_d14.g1 CHROMAT_FILE:
MSMg01no359_d14.g1 PHD_FILE: MSMg01no359_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:40 2005
(409 letters)
>mm_chr5_132528307_132529115
Length = 809
Score = 752 bits (389), Expect = 0.0
Identities = 404/409 (98%)
Strand = Plus / Minus
Query: 1 caggcgaaggattacaacttctcagctacttaggctacccccaaatgatccatcagttgc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 609 caggcgaaggattacaacttctcagctacttaggctacccccaaatgatccatcggttgc 550
Query: 61 ggccgaaacataccagcttgaaaatgtattcgtgggattaggaatgagcacgtcttcact 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ggccgaaacatcccagcttgaaaatgtattcgtgggattaggaatgagcacgtcttcact 490
Query: 121 gaaatcttgcggtttagctctagcgattagggtagtcagttcgtgtctttgaaatactga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gaaatcttgcggtttagctctagcgattagggtagtcagttcgtgtctttgaaatactga 430
Query: 181 gctggctgacagcttaaaatcctaagtttcctttaaacttgagctgggctttggcggaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gctggctgacagcttaaaatcctaagtttcctttaaacttgagctgggctttggcggaaa 370
Query: 241 aagggggtagcacgggagggttggattttatgtacgcttctccaaacagaattcacttaa 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aagggggtagcacaggagggttggattttatgtacgcttctccaaacagaattcacttaa 310
Query: 301 gtgtgtttgccgtcagggtcttgggaatgcaagcaagctgattccctgccaccctccttg 360
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 309 gtgtgtttgccgtcagggccttgggaatgcaagcaagctgattccctgccgccctccttg 250
Query: 361 ggttctgccctcagcccagatcaacatttagtcagataattgacaccgg 409
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggttctgccctcagcccagatcaacatttagtcagataattgacaccgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
