BAC Information

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BAC

Clone NameMSMg01-360E12
Chromosome5 (Build37)
Map Location 145,735,951 - 145,736,189
singlet/doubletsinglet
Overlap genenone
Upstream gene4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1
Downstream geneAW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360E12.T7 (MSMg01no360_e12.b1)MSMg01-360E12.TJ (MSMg01no360_e12.g1)
ACCAG469494AG469495
length755773
length of high quality
(start - end)
305 (66 - 370)241 (73 - 313)
definitionCHROMAT_FILE: MSMg01no360_e12.b1 PHD_FILE: MSMg01no360_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:59 2005CHROMAT_FILE: MSMg01no360_e12.g1 PHD_FILE: MSMg01no360_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTCGCGCCCGCAAAAAATTATTATTCTAAAAGTATCCGCGGAATT
CATATTTCCCCCAGGCTGGCCTGGAACTCACAGAGAAGCCACTGACTCAC
AAGTACTGGTATTACCGACACATAGTAGTGGATCTAGCTTATTTTATTTG
TTTGGTTTTTATTATTTTTTTGGTGTAGGATCTCTGTCTCTGCATTCTTG
GCTGTCCTAGAACTCATTATATAGGCCAAACTGGCTTTGAATTCTGAGAT
CTACCTGCCTCTGCTGGGATTAAAGGCATAAACTACTATACCCGGTTTAT
TTGTTATTTTTTTTTTTTCTTTTTAAACTTTATTTTTGTCTTTTTTCTTG
GATAAGGTATCTCTGGGTAGCCCTGGCTGTCCTGGAATTCACCTTGTAGA
CTAGGTTGGCCTCAAACTCAAAGACCCTCCTGTCTCTGCCTTCTGAGTGT
TGTTATTATGTGAGTTTCTGTCCCACTCTTATCCCCCTAGCTCATCCATT
AATGATCTATAGACCTGTTATTTTTTTAATTATCTTTCTTCTTATTTTTC
TTTTTGCCTCTCTGTGCATGTATGTTACATTGTTCTGTCGCCTGTATTTA
GGTTTATTTCTTGGTTTCATCTGCCATGATGTCCTTGTTTTGCTTTTGTT
TTTCTTTTAAACCATTCTTTACATTTTTTTTCTTCTCTCTATATTGTAGC
CTTTTTTTTTCCTCACCAAACCCTGATATCACCTATTTCTACTTCTTATC
TTTTT
ATTGCTGTGCGAAGCCTGGNGGNCGCCTGTTTCACAAATTTAGGTGAACT
ATAGAAGTTCTAACAAAATTCAAAAAGCAAAGGAAGAATGGGGGGCATTG
AAAATCAAGATTGTTTACCAAGCAAAGGCCCTGGATGTTTACAGGACTTC
CGTTAAAGAACTTCATGGACTGACGTGGGTATACTACAGACACAGGCTTG
CTGGGGTTACCGACATGCAATATTATGCCCCATTTTTACACGGGTGTCTT
GGCTTTGAACTCAGGCTCTCTTGCAGCAAGCAACTTACCTTTGGGTCATC
TCTCCAGCTGCTTCNTTCNNATATGTCTTGTTTCACCAATTTAAGACTCT
GTCATCTCCTCTCTGTGAAAGATGACACATCAGGTAATGAAGACATCCGT
CCTCCTGCCTCATCTTTTTTTTTTTTTACAGGTTTGCACTCCTTGCTCCC
TCTGCTCGCAGTTTGCTATACACTGTGCCTTCCTGACAGACTGAAATCTG
TACTCCCCCTCTGCTCCCCCTTCCAGTTGACACAGCTTCATTTTCCGTCA
ATTGTATTCTTACCATTTCCTCCCCAGTTAATTTTTGCCATCCTTTTTCG
TTCCCTTCCTCCTCGTACCCATTTCTTGCTTTCCCAAGTTTTTCCATTTT
TTTTTTTTTTCTCCCCTTTTCCCGCCTTTTCCCTTTTACCTCCTCTTTAC
GTCCTTCCCCCTTTTCCTATCTTCCCTTTTCTCCCCCCCTTTTTCCTCCT
CTCCTTTTCTTCCCTTTATTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_e12.g1 MSMg01no360_e12.g1 CHROMAT_FILE:
MSMg01no360_e12.g1 PHD_FILE: MSMg01no360_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:59 2005
         (241 letters)



>mm_chr5_145735751_145736390
          Length = 640

 Score =  402 bits (208), Expect = e-117
 Identities = 232/244 (95%), Gaps = 9/244 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagcaaaggaagaatggggggcattgaaaatcaagattgtttaccaagcaaaggccct 60
           ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 201 aaaagcaaaggaagaat-gggggcattggaaatcaagattgtttagcaagcaaaggccct 259

                                                                       
Query: 61  ggatgtttacaggacttccgttaaagaacttcatggactgacgtgggtatactacagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggatgtttacaggacttccgttaaagaacttcatggactgacgtgggtatactacagaca 319

                                                                       
Query: 121 caggcttgctggggttaccgacatgcaatattatgccccatttttacacgggt----gtc 176
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||    |  
Sbjct: 320 caggcttgctggggctaccgacatgcaatattatgccccatttttacacgggtaccag-- 377

                                                                       
Query: 177 ttggctttgaactcaggctctcttgcagcaagcaacttacctttgggtcatctctccagc 236
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 --ggctttgaactcaggctctcttgcagcaagcaacttacctttgggtcatctctccagc 435

               
Query: 237 tgct 240
           ||||
Sbjct: 436 tgct 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 640
Length adjustment: 9
Effective length of query: 232
Effective length of database: 631
Effective search space:   146392
Effective search space used:   146392
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)