Query= MSMg01no360_k21.b1 MSMg01no360_k21.b1 CHROMAT_FILE:
MSMg01no360_k21.b1 PHD_FILE: MSMg01no360_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:29 2005
(532 letters)
>mm_chr5_98690694_98691626
Length = 933
Score = 907 bits (469), Expect = 0.0
Identities = 503/529 (95%), Gaps = 24/529 (4%)
Strand = Plus / Plus
Query: 5 gaattcttcacagttctgcgtagaagagtctgtgttttattttgggatttttt-gtcatc 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattcttcacagttctgtgtagaagagtctgtgttttattttgggatttttttgtcatc 264
Query: 64 ctaggtattttggaaatatttgctgtgtctcaggggattgtaggaatacgaggagttttc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaggtattttggaaatatttgctgtgtctcaggggattgtaggaatacgaggagttttc 324
Query: 124 agcaacaaatttttagcgatgtcaaaaaaaggaaaactccatgcaagtgtaagtagaaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcaacaaatttttagcgatgtcaaaaaaaggaaaactccatgcaagtgtaagtagaaac 384
Query: 184 ccctttgtgtttgttgaaaagtgctccaccggttgtgcgtctgtaacaaagtgaagagat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccctttgtgtttgttgaaaagtgctccaccggttgtgcgtctgtaacaaagtgaagagat 444
Query: 244 tgtttttgaaatgagtggataagatagaccatttgcctaaggaacttatttgtttttttt 303
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 tgtttttgaaatgagtggataagatagaccatttgcctaaggaacttatttggttttttt 504
Query: 304 ctggtaaaaatgatatgtatgtataaccaattgtgaatctgtctgtaagtcattattgga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctggtaaaaatgatatgtatgtataaccaattgtgaatctgtctgtaagtcattattgga 564
Query: 364 acatgtctttgttttggaaacaaatagaaccttcaaggctgtaaagggtaaatgcacttg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acatgtctttgttttggaaacaaatagaaccttcaaggctgtaaagggtaaatgcacttg 624
Query: 424 taaacagcctttgcaaacggattgccattgttagctttctagagagccctgggtgagact 483
||||||||||||||||||||||||||||||| ||||||
Sbjct: 625 taaacagcctttgcaaacggattgccattgt-----------------------gagact 661
Query: 484 tgtcacaggagtgagctattccgtggcctcacataaactttacatttgg 532
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tgtcacaggagtgagctattccgtggcctcacataaactttacatttgg 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 933
Length adjustment: 10
Effective length of query: 522
Effective length of database: 923
Effective search space: 481806
Effective search space used: 481806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_k21.g1 MSMg01no360_k21.g1 CHROMAT_FILE:
MSMg01no360_k21.g1 PHD_FILE: MSMg01no360_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:29 2005
(462 letters)
>mm_chr5_98863159_98864021
Length = 863
Score = 783 bits (405), Expect = 0.0
Identities = 447/461 (96%), Gaps = 1/461 (0%)
Strand = Plus / Minus
Query: 3 aagaatgctgataatgctgagataggaataacagaaagaaaagctttggatgaagaagaa 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aagaatgctgataatgctgagataggaataacagaaagaaaagctttggatgaagaagaa 604
Query: 63 ggtgagaataaagtaatctgctactttcaagaatatgatatatccagatacagatgtaca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ggtgagaataaagtaatctgctactttcaagaatatgatatatccagatacagatgtaca 544
Query: 123 agaccagggtaccagagtttgctcttacagtcattgcaacgtaagataagacctacagaa 182
|||| ||||||||| ||||||| |||||||||||||||| || || ||||||||||||||
Sbjct: 543 agactagggtaccatagtttgcacttacagtcattgcaatgtgaggtaagacctacagaa 484
Query: 183 gataactgtaaatatatcccctttaaagactgatagagcacatggttcctggtacgctga 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 483 gataactgtaaatatatcccctttaaagactgatagagcacatggttcctggtacgctaa 424
Query: 243 aatcccaacacttcagtggttttccctaccatggtagctaattgctaaataatgtttaaa 302
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 423 aatcccaacacttcagtggttttccctaccatggtagctaattgctaaataaagttaaaa 364
Query: 303 aaatcaaaacaaaaa-cttcatctgaaaataacctattcataggctaagcagtcaacaca 361
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 363 aaatcaaaacaaaaaacttcatctgaaaatgacctattcataggctaagcagtcaacaca 304
Query: 362 gagcctataaacctctaaacaagtcctttgtctcccagaaaagtcacaaatcctctgtgt 421
|||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gagcctataagcctctaaatacgtcctttgtctcccagaaaagtcacaaatcctctgtgt 244
Query: 422 cctggcctaagagccccagagagaaattattcactctcaaa 462
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cctggcctaagagccccagagagaaattattcactctcaaa 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 863
Length adjustment: 10
Effective length of query: 452
Effective length of database: 853
Effective search space: 385556
Effective search space used: 385556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
