NAAATTAGTCCTCATGTCACTANACGANTCACTATTTCGAGAGGATCCGC
GGAATTCCCTGTCTGCCCTGGGATTCGCAGTACCCTCACAAGCATGATAT
CACTCCCGAGAACTTCAAATGCAAGTGAGTAGGTTTCAGGCAATGCTGCA
AACTCCAGCAGATGCCAGGGAAATGAGGAAGATTGCTTTCGCTCCCTCTC
TCAGTGTTACAATGTAGCGGCCTCCGTGTACTTCAGGGCAAATGGGCTCA
GTCTCTTTTTGTTTTTTTGTTTTTTTCTGGCCTCAAATAAACATTTTATT
TTTTTGGTATTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTGTTTTGTT
TTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTACAACTCACTTT
GTAGACAAGGCTGGCCTCGAAAAAATCTGCCTGCCTCTGCCTCCCTGGGA
TTAAAGGCGTGCGCCACCACCGCTGGCAAATAAGCAATTTTTAACATGTA
TTCTAGGTAATGCTGATCTAGAGGGTTGACAAACCATGTTTTTATAAAAA
CATCTCTAAGGTCCTCATTTTCCTTTTGCTTGTACAGACTTATGTAAGAA
ATCTATTTTTTTATGAAACGGGTTTCCGAATAGAATCCCTCCCAGGGTTC
CCAATTTGAATGAAGAGGAAAGAGTAACTTTTTCTTTTTTTTTACTGGTG
GGAAACAATTGGATATTTAATACAATCTCTTCCTTTAATG

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGAGCCATTTTTTTTTAAT
TGGGTTACTTGGTTTGTCATTATCTAAATCTTGAGTTATTTATATAATTT
GGGTAATAGTCCTCTGTTGGATGTATGGTTGGTGAAGATCTGTTCCCATT
CTGTAGGCTGCTGTTTTGTTTTGTTTTTGGTTTTTTGTTTTGTTTTCTTT
TCTTCTCTTTTTGTCTTGTTTTGTTTTCAGAGATAGTCTTTCCCCTCCCC
ACCCCCATTGGCTACTTTTTAATATTTATTTTTTTCTTAGACATTTTATT
TATTTACATTTCAAATGTTATCCTCTTTTCTAGTTTCCCCTCTGGAAATC
CCCTATCCTCTCCCTCCTTCCCCTTCTCCCTAACACACCCACTCCTGCTT
CCTGGCCCAGGCATTTCCCTATACTGGGGTATAGAACCTTTACAGGATCA
AGGTCCCCTCCTCCCATTGATGACAGACTAGGCCATCCTCTGCTACCTAT
GCAGTTATAAACCATGAGTCCCACTATTGTGTTTTTCTTTGATTCGGTGG
CTTAATCCCCCATAGCCCCGCATGATTCCTGATTATATCTTTATTGCTTT
TTCCCCCTCTTTGGCTTTATTATCCCCTTCTAACTTTTGTGTATCTCTCT
TCTTATCTTTTCACTTCTTGGTTCCCTCGTTGTTTCCCTCCACTGTAGTG
TTCTGCCCGAGTTATCCCCCTCCTCCAG

Query= MSMg01no360_l15.b1 MSMg01no360_l15.b1 CHROMAT_FILE:
MSMg01no360_l15.b1 PHD_FILE: MSMg01no360_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:33 2005
         (406 letters)



>mm_chr5_16099584_16100391
          Length = 808

 Score =  690 bits (357), Expect = 0.0
 Identities = 399/421 (94%), Gaps = 15/421 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattcgcagtaccctcacaagcatgatatcactcccgagaacttcaaatgcaagtgagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gattcgcagtaccctcacaagcatgatatcactcccgagaacttcaaatgcaagtgagta 260

                                                                       
Query: 61  ggtttcaggcaatgctgcaaactccagcagatgccagggaaatgaggaagattgctttcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ggtttcaggcaatgctgcaaactccagcagatgccagggaaatgaggaagactgctttcg 320

                                                                       
Query: 121 ctccctctctcagtgttacaatgtagcggcctccgtgtacttcagggcaaatgggctcag 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccctctctcagtattacaatgtagcggcctccgtgtacttcagggcaaatgggctcag 380

                                                                       
Query: 181 tctctttttgtttttttgttttttt--ctggcctcaaataaacattttatttttttggta 238
           ||||||||||||||||| |||||||  ||||||||||||||||||||| |||||||||||
Sbjct: 381 tctctttttgtttttttttttttttttctggcctcaaataaacattttttttttttggta 440

                                                                       
Query: 239 ttttgtttttgtttttgtttt----tgtttt---------tgttttgttttgttttcgag 285
           |||||||||||||||||||||    ||||||         ||||||||||||||||||||
Sbjct: 441 ttttgtttttgtttttgttttgttttgttttgttttgttttgttttgttttgttttcgag 500

                                                                       
Query: 286 acagggtttctctgtgtagccctggctgtcctacaactcactttgtagacaaggctggcc 345
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 501 acagggtttctctgtgtagccctggctgtcctgcaactcactttgtagaccaggctggcc 560

                                                                       
Query: 346 tcgaaaaaatctgcctgcctctgcctccctgggattaaaggcgtgcgccaccaccgctgg 405
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgaaaaaatctgcctgcctctgcctccctgggattaaaggcgtgcgccaccaccgctgg 620

            
Query: 406 c 406
           |
Sbjct: 621 c 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 808
Length adjustment: 9
Effective length of query: 397
Effective length of database: 799
Effective search space:   317203
Effective search space used:   317203
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)