Query= MSMg01no360_p17.b1 MSMg01no360_p17.b1 CHROMAT_FILE:
MSMg01no360_p17.b1 PHD_FILE: MSMg01no360_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:52 2005
(278 letters)
>mm_chr5_127877419_127878095
Length = 677
Score = 451 bits (233), Expect = e-131
Identities = 260/269 (96%), Gaps = 1/269 (0%)
Strand = Plus / Minus
Query: 10 gagagagagagagagagagagagagagagagagagagagagccagagatgaatagaactc 69
||||||||| |||||| ||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct: 518 gagagagagggagagacagagacagagacagagacagagagccagagatgaatagaactc 459
Query: 70 agcgatgccatctacttcacactaatccagcatgcctgagctcctatgcactttaacttt 129
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 458 agcgatgccatctacttcacactaatccagcatgcctgagctcctatgcgctttaacttt 399
Query: 130 acagttggagaagccagtttttctttccgcttccattatctgatttaagtttctctctcc 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 398 acagttggagaagccagtttttctttccgcttccattatctgatttaagtttctc-cacc 340
Query: 190 catcagggaaatagccctagctcccatacccccaagcaagacagttctgaactcaatgtt 249
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 339 catcagggaaatagccctagctcccatacccccaagcaagacagttctgaattcaatgtt 280
Query: 250 gaatcaggactcggtcacctctaaagttc 278
|||||||||||||||||||||||||||||
Sbjct: 279 gaatcaggactcggtcacctctaaagttc 251
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 677
Length adjustment: 9
Effective length of query: 269
Effective length of database: 668
Effective search space: 179692
Effective search space used: 179692
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no360_p17.g1 MSMg01no360_p17.g1 CHROMAT_FILE:
MSMg01no360_p17.g1 PHD_FILE: MSMg01no360_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:52 2005
(542 letters)
>mm_chr5_127695474_127696415
Length = 942
Score = 971 bits (502), Expect = 0.0
Identities = 532/542 (98%)
Strand = Plus / Plus
Query: 1 catagaaggatctgggactcgggctttaaaacctggcccttctagccatacctgggaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagaaggatctgggactcgggctttaaaacctggcccttctagccatacctgggaata 260
Query: 61 acaacaggctctttatgaagtgataaaattatttatctgtaaactggaatcatggcccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaacaggctctttatgaagtgataaaattatttatctgtaaactggaatcatggcccac 320
Query: 121 agacacaactgccttgggatcccagtaacactagagtccagatccacaaactcagttcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacacaactgccttgggatcccagtaacactagagtccagatccacaaactcagttcat 380
Query: 181 agcttttccatccatgagatgtcctttaagatacatgtgaaggctactctgaagccacgg 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 agcttttccatccatgagatgtcctttaagatacatatgaaggctactctgaagccacgg 440
Query: 241 gagaaagagttgagccaaaactggaggaggttgatgggagccttatccaggaattgatga 300
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 441 gagaaagagttgagccaaaactggaggaggatgacgggagccttatccaggaattgatga 500
Query: 301 aggctccactacagctttccttgaagctgaaagaaaaggcgccctggggaagacttgcat 360
|| | ||| |||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 501 agacaccattacagctttccttgaagctgaaagaaaaggggtcctggggaagacttgcat 560
Query: 361 ttacatctgacttcattcaaaagaaagcccattttaggggctggggagatggcccagtag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttacatctgacttcattcaaaagaaagcccattttaggggctggggagatggcccagtag 620
Query: 421 ttacaagcactggctgcttgtgcagaggacctgagttcaattcccagcacccacacagtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttacaagcactggctgcttgtgcagaggacctgagttcaattcccagcacccacacagtg 680
Query: 481 actcacaacctcctgaaactccagttccagggatctgacgccctcttctggcctctgcgt 540
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 681 actcacaacctcctgaaactccagttccaggaatctgatgccctcttctggcctctgcgt 740
Query: 541 gc 542
||
Sbjct: 741 gc 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
