BAC Information

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BAC

Clone NameMSMg01-361L07
Chromosome5 (Build37)
Map Location 63,807,449 - 63,808,118
singlet/doubletsinglet
Overlap genenone
Upstream geneCentd1
Downstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361L07.T7 (MSMg01no361_l07.b1)MSMg01-361L07.TJ (MSMg01no361_l07.g1)
ACCAG470567AG470568
length753760
length of high quality
(start - end)
669 (50 - 718)522 (78 - 599)
definitionCHROMAT_FILE: MSMg01no361_l07.b1 PHD_FILE: MSMg01no361_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:49 2005CHROMAT_FILE: MSMg01no361_l07.g1 PHD_FILE: MSMg01no361_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTAAATTCACAAACGCCTCAAACTTCTTTGTTCCCTATAA
CATTCTCTGCCAGAACCAACCTGATTCTTGGTGCTCATTTTCTATATAAT
AGGATTGCCAGTCCCCTCGGTCACAGAAAGCTTCAGGGGATTTAATGTCT
AATCTGAGACACATGTCCTTTTTATTAGACACCTACTCATTTGCTGAGTA
GCATCCATTATAGCACCATGCCAATAACTGGATAACAGACACATTTAAAG
GGCTGTCACTCACCTATTCCTGTTTCCTGTTTGCTTCAGAATGTGGAATT
GTCAAGGTTAAAAGCAGGACAGGGCAAACCAGAATTGTTGGTTCCCAGAA
CCTAGCGCTGGACAAATTTGTTTACGTTCATGTTTCCCCATGATAGTCAC
CTTTTTAAGGTAATGTTTCCCTTTGGATTCTAGAACATGATACTTCTGTT
TGTGCAAAATAGGTGACTACTGGTTTTCTATTTCCAGTGGATTAACAGTT
TCTTAAGGTCTGCACATAGTATTCTATGTGTTGATCTTAACAGTAGCATC
TAAACACTCATTGAGCAGGGAAATTATAAGCACACTGTGAAAAAAACTGA
ATATAATCATACCATGGGTATTACGAATAAGTAAAAATGAATGTACTAGG
AAAACATAAATCACTGAATGTAAGAGTNCATTATATGATAACCTGTACCT
TTN
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAG
ATCAAAAATTCAGGTGATAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGTCACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATA
AGTGGATATTAGCCCAAAACCTAGGATACCCCAGATATAAGATACAATTT
CCTAAACACTTGGAACTCTTGAAAAAAGAAGACTGAAGTGTGGACCCTAT
GCCCCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_l07.b1 MSMg01no361_l07.b1 CHROMAT_FILE:
MSMg01no361_l07.b1 PHD_FILE: MSMg01no361_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:49 2005
         (669 letters)



>mm_chr5_63807245_63808314
          Length = 1070

 Score = 1253 bits (648), Expect = 0.0
 Identities = 663/670 (98%), Gaps = 5/670 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctaaattcacaaacgcctcaaacttctttgttccctataacattctctgccag 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctaaattcaaaaacgcctcaaacttctttgttccctataacattctctgccag 264

                                                                       
Query: 65  aaccaacctgattcttggtgctcattttctatataataggattgccagtcccctcggtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaccaacctgattcttggtgctcattttctatataataggattgccagtcccctcggtca 324

                                                                       
Query: 125 cagaaagcttcaggggatttaatgtctaatctgagacacatgtcctttttattagacacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagaaagcttcaggggatttaatgtctaatctgagacacatgtcctttttattagacacc 384

                                                                       
Query: 185 tactcatttgctgagtagcatccattatagcaccatgccaataactggataacagacaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tactcatttgctgagtagcatccattatagcaccatgccaataactggataacagacaca 444

                                                                       
Query: 245 tttaaagggctgtcactcacctattcctgtttcctgtttgcttcagaatgtggaattgtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttaaagggctgtcactcacctattcctgtttcctgtttgcttcagaatgtggaattgtc 504

                                                                       
Query: 305 aaggttaaaagcaggacagggcaaaccagaattgttggttcccagaacctagcgctggac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaggttaaaagcaggacagggcaaaccagaattgttggttcccagaacctagcgctggac 564

                                                                       
Query: 365 aaatttgtttacgttcatgtttccccatgatagtcacctttttaaggtaatgtttccctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatttgtttacgttcatgtttccccatgatagtcacctttttaaggtaatgtttccctt 624

                                                                       
Query: 425 tggattctagaacatgatacttctgtttgtgcaaaataggtgactactggttttctattt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggattctagaacatgatacttctgtttgtgcaaaataggtgactactggttttctattt 684

                                                                       
Query: 485 ccagtggattaacagtttcttaaggtctgcacatagtattctatgtgttgatcttaacag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccagtggattaacagtttcttaaggtctgcacatagtattctatgtgttgatcttaacag 744

                                                                       
Query: 545 tagcatctaaacactcattgagcagggaaattataagcacactgtgaaaaaaa-ctgaat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 745 tagcatctaaacactcattgagcagggaaattataagcacactgtgaaaaaaaactgaat 804

                                                                       
Query: 604 ataatcataccatgggtattacgaataagtaaaaatgaatgtactaggaaaacataaat- 662
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct: 805 ataatcataccatgggtattacaaataagtaaaaatgaatgtactaggaaaacataaata 864

                     
Query: 663 ---cactgaa 669
              |||||||
Sbjct: 865 aatcactgaa 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1070
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1060
Effective search space:   698540
Effective search space used:   698540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)