BAC Information

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BAC

Clone NameMSMg01-362G20
Chromosome5 (Build37)
Map Location 125,344,733 - 125,513,013
singlet/doubletdoublet
Overlap geneZfp664, 3110032G18Rik, Ncor2
Upstream geneDenr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92
Downstream geneScarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362G20.T7 (MSMg01no362_g20.b1)MSMg01-362G20.TJ (MSMg01no362_g20.g1)
ACCAG471115AG471116
length755769
length of high quality
(start - end)		499 (48 - 546)484 (76 - 559)
definitionCHROMAT_FILE: MSMg01no362_g20.b1 PHD_FILE: MSMg01no362_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:47 2005CHROMAT_FILE: MSMg01no362_g20.g1 PHD_FILE: MSMg01no362_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,512,518 - 125,513,013)(125,344,733 - 125,345,216)
sequence
NTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATAGCATTGCAAGATGGTGCAGTCCCCACTGGGTGAGGAAGG
TTGTGTTGACCTGAAGTTAGCCTCACTCTGGAACCCCTGGGCCGGTGGGT
GACCCTGGATGTGTAGCCAGACTCAAGTGAGCAGGGCGTCCAGCCTCTGG
ACATCATGTCCTGCTAAAGGTCTCTGTCCATTTGCCCAAGGGATTAGAGA
TGCCCCATCCTGTGCAGACATACAGGAAGAGCGGCATCTGGCCAGCCAAA
TACAGACCTGCACCCTCTCCCCAGGGCACCCCACTCAAGTACGACTCTGG
GGCACCCTCCACTGGCACCAAGAAACACGACGTGCGCTCCATCATCGGCA
GCCCCGGCCGGCCTTTCCCTGCCCTGCACCCGCTGGACATAATGGCTGAC
GCCCGGGCACTGGAGCGTGCCTGCTATGAAGAGAGTCTGAAGAGCCGGTC
AGGGACCAGCAGTGGTGCAGGGGGCTCCATCACACGTGGGGCTCCAGTCG
TCGTGCCTGAACTGGGCAAGCCACGGCAAAGCCCACTGACTTTCGAAGAA
CACGGGGGATCCTTTACCAGTCACCTGCCACGTGGTTCCTCTGTGAACAC
CAGGGAGCCCATCCCCCGCCTTCCCGAAGTTCATTTGCGCGAAAATCCCT
CACGTTGCCCACTTGTGGGAAGGAGAAACTAATTTTTCTAACCGATACCT
TGGTG

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACACAGGTGTACCTCTGAGGTGACT
GCAGACTGTTCTTTTGCCTGTGACCTTGAGGAGGACGCTTAGAGCCTCAG
TTTCTCTAAAGGTCTATTCACTACACAGACCTCGCTGACTGCGTGTGAAA
GCTGAAAGTATAAAGCGGTAAACAGAGACTAAGTATTAGTTCTGGAGACT
CAAAACTCACCAACTTGCAATGGAATTTGTATAAATTTTTCATGAAATGA
ACATAATGTAGATTATTTACATCAGTCAGCTTTAAAACTTTTAAGTTTTT
GATTCTGTTACAATTAATTTTTATGGAATAGTGGCAATGCTGTGTTTCTA
ATGAATACTTTACAAGATATCTTTTTCCTAATGCTTTTCTATTCTTGAAA
AGCATCCATTAGTTGGTTTCTTTTTTGTTCAGATGTATGAGTGCCTGTAG
CATGCCAAGAAGACCAATTTGCCCTGTTCTCTACAAGTTTAATCTGTANA
GAGAAAGGATGAGAGATTGTGACTAGACCTAGGCTATCTGCTTANGGAAG
TTAGGTAACACCTAATATATAAAAGAGCATANNAATGAGAAACCCGTTTT
AATTTGAGGGACCTTGAATGGTTCCCCCCCGCCCCTAAAAACAAGATTTA
ACCGAATCTGGAGGATGGGAGAAGAATGGCTTTTCCTGGAGGGTGGGGGA
TAATATCTGTCCCCCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_g20.b1 MSMg01no362_g20.b1 CHROMAT_FILE:
MSMg01no362_g20.b1 PHD_FILE: MSMg01no362_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:47 2005
         (499 letters)



>mm_chr5_125512315_125513213
          Length = 899

 Score =  959 bits (496), Expect = 0.0
 Identities = 496/496 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatagcattgcaagatggtgcagtccccactgggtgaggaaggttgtgttgac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ggaattccatagcattgcaagatggtgcagtccccactgggtgaggaaggttgtgttgac 640

                                                                       
Query: 64  ctgaagttagcctcactctggaacccctgggccggtgggtgaccctggatgtgtagccag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ctgaagttagcctcactctggaacccctgggccggtgggtgaccctggatgtgtagccag 580

                                                                       
Query: 124 actcaagtgagcagggcgtccagcctctggacatcatgtcctgctaaaggtctctgtcca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 actcaagtgagcagggcgtccagcctctggacatcatgtcctgctaaaggtctctgtcca 520

                                                                       
Query: 184 tttgcccaagggattagagatgccccatcctgtgcagacatacaggaagagcggcatctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tttgcccaagggattagagatgccccatcctgtgcagacatacaggaagagcggcatctg 460

                                                                       
Query: 244 gccagccaaatacagacctgcaccctctccccagggcaccccactcaagtacgactctgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gccagccaaatacagacctgcaccctctccccagggcaccccactcaagtacgactctgg 400

                                                                       
Query: 304 ggcaccctccactggcaccaagaaacacgacgtgcgctccatcatcggcagccccggccg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ggcaccctccactggcaccaagaaacacgacgtgcgctccatcatcggcagccccggccg 340

                                                                       
Query: 364 gcctttccctgccctgcacccgctggacataatggctgacgcccgggcactggagcgtgc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gcctttccctgccctgcacccgctggacataatggctgacgcccgggcactggagcgtgc 280

                                                                       
Query: 424 ctgctatgaagagagtctgaagagccggtcagggaccagcagtggtgcagggggctccat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctgctatgaagagagtctgaagagccggtcagggaccagcagtggtgcagggggctccat 220

                           
Query: 484 cacacgtggggctcca 499
           ||||||||||||||||
Sbjct: 219 cacacgtggggctcca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_g20.g1 MSMg01no362_g20.g1 CHROMAT_FILE:
MSMg01no362_g20.g1 PHD_FILE: MSMg01no362_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:47 2005
         (484 letters)



>mm_chr5_125344533_125345416
          Length = 884

 Score =  899 bits (465), Expect = 0.0
 Identities = 479/484 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacaggtgtacctctgaggtgactgcagactgttcttttgcctgtgaccttgaggagga 60
           |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 acacgggtgtacctctgaggtgactgcagaccgttcttttgcctgtgaccttgaggagga 260

                                                                       
Query: 61  cgcttagagcctcagtttctctaaaggtctattcactacacagacctcgctgactgcgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgcttagagcctcagtttctctaaaggtctattcactacacagacctcgctgactgcgtg 320

                                                                       
Query: 121 tgaaagctgaaagtataaagcggtaaacagagactaagtattagttctggagactcaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaagctgaaagtataaagcggtaaacagagactaagtattagttctggagactcaaaa 380

                                                                       
Query: 181 ctcaccaacttgcaatggaatttgtataaatttttcatgaaatgaacataatgtagatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcaccaacttgcaatggaatttgtataaatttttcatgaaatgaacataatgtagatta 440

                                                                       
Query: 241 tttacatcagtcagctttaaaacttttaagtttttgattctgttacaattaatttttatg 300
           |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 tttacaacagtcagctttaaaacttttaagtttttgatcctgttacaattaatttttatg 500

                                                                       
Query: 301 gaatagtggcaatgctgtgtttctaatgaatactttacaagatatctttttcctaatgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaatagtggcaatgctgtgtttctaatgaatactttacaagatatctttttcctaatgct 560

                                                                       
Query: 361 tttctattcttgaaaagcatccattagttggtttcttttttgttcagatgtatgagtgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttctattcttgaaaagcatccattagttggtttcttttttgttcagatgtatgagtgcc 620

                                                                       
Query: 421 tgtagcatgccaagaagaccaatttgccctgttctctacaagtttaatctgtanagagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 tgtagcatgccaagaagaccaatttgccctgttctctacaagtttaatctgtagagagaa 680

               
Query: 481 agga 484
           ||||
Sbjct: 681 agga 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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