BAC Information

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BAC

Clone NameMSMg01-362H24
Chromosome5 (Build37)
Map Location 34,854,756 - 34,855,131
singlet/doubletsinglet
Overlap geneTnip2
Upstream gene2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480
Downstream geneSh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c, Hmx1, Cpz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362H24.T7 (MSMg01no362_h24.b1)MSMg01-362H24.TJ (MSMg01no362_h24.g1)
ACCAG471171AG471172
length771780
length of high quality
(start - end)		396 (50 - 445)338 (81 - 418)
definitionCHROMAT_FILE: MSMg01no362_h24.b1 PHD_FILE: MSMg01no362_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:53 2005CHROMAT_FILE: MSMg01no362_h24.g1 PHD_FILE: MSMg01no362_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTAACTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACATATTATCAGACTGGCACCTGTCACTTCTTCCCACATAA
TACTAAAATGCCACCAACCAAAACCATGGGTCTTCTTTCTCAGAGCACCA
TCCTTAGGAGCCCTATGCATCTCTCAGGCCCCTGGCACCCTCCTCAAGAT
TCAGAGCCCCACATTCCACAGAAGACCTCCCTAACACAGAACCCAAGAAC
CAAGACCTATACTGCCTCCTCATACCCAACACACACACACTGGAACCTGC
ACACAGTCCTCAAAGGGCAATGCCTGTCAGGATATCCTTGAGACCCTTTT
GGCCCCATGCTTCGCTCATGTCCTTTAGAGCCTCTAGTGTCTGTCCCTCA
GAACCCTGCACCCACAGAACCCTGAACACCACCCCTCCTCAGAATTCCAT
CTTAGTCAAGCCTGGTGCCCCCACTGTTGGTTGCTTGATGAGAATGCCCC
CCAGGCTCATATATTTGCATTTTTTTCTCCTCAGAAAGAAACACAATTTG
AGAAGGAATAGAAATGTGGGCCTGTTGGAAGAAAATGGGTCCCTAAGAAG
GGGGTTTTGAGGTTTCACAAACCCGCCCCCCCCCAGTGGGAGGCCCTCTG
CCCTGGGGCGGGAGGATAATTTTTTTTTTTTTTTCGCTCCAAGTTGGTGG
GGGGGGTTCTTTTCCTCCCCCTTTAGTAAATGGCGGCGCCCCTTCTATTT
TTCCGCGCTCCTCTCTTATTA

NNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTTTGGTTCGATACCCC
ATTTTTTGATTGGGTTGTTTGGTTTTTTGGTGATTAACTTCTTGAGTTCT
TTATATATTTTGGATATTAGCCCTCTATCAGATATGGGGTTAGTGAAGAT
TTTTGCCCAATCTGTAGGTTGCCGATTTATCTTTTCGAGTATGTCCTTTG
CCTTACAGAAGCTTTCCAGTTTCATGAGGTCCCATTTATCAATTGTTGAT
CTTAGAGCGTGAGCCATTGAAGTTCTGTTTAGGAAATTTCCCCCTGTGCC
AACAAGTTCAAGACTCTTTCCCACTTTCTCTTCTATTAGATTCAGTGTAT
CTAGTTTTTTGTTGAGGTCCTTGCACCACTTGGAGTTGAGTTTTGTAGAA
GATGATAAAAATGGGGTTTATTTTCCTTCTTTCTTCATTCCAGCCCGTTA
TACCAGCACCAATTTGCTTCCTTTTTTCCCCTTTAATTTTTGTAGCTCCT
CTTCACATTTTTCTTTCTGCGCGCCCGTTCTTTTCTGTTGCTTTCTTCCT
CCCCCCTTCTTTCCTTTCCTCCCCCCCCTCGCCCTTATCCCACTTCCGCT
TCTTCCTCTCTTCCTTTTCCTTCCTCTCCTTCCCTCCCTTCCTTTCCCCC
TCTCCCCTTCCTCCTCCTCCTTCGTTTCTTTTTTTCCCCCCCCCTCCCCT
TCTCTCTTTTCCTACCTCTTCCCCCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_h24.b1 MSMg01no362_h24.b1 CHROMAT_FILE:
MSMg01no362_h24.b1 PHD_FILE: MSMg01no362_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:53 2005
         (396 letters)



>mm_chr5_34854552_34855347
          Length = 796

 Score =  677 bits (350), Expect = 0.0
 Identities = 374/392 (95%), Gaps = 16/392 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatattatcagactggcacctgtcacttcttcccacataatactaaaatgcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatattatcagactggcacctgtcacttcttcccacataatactaaaatgcca 264

                                                                       
Query: 65  ccaaccaaaaccatgggtcttctttctcagagcaccatccttaggagccctatgcatctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaaccaaaaccatgggtcttctttctcagagcaccatccttaggagccctatgcatctc 324

                                                                       
Query: 125 tcaggcccctggcaccctcctcaagattcagagccccacattccacagaagacctcccta 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 tcaggcccctggcaccctcctcaagattcagaaccccacattccacagaagacctcccta 384

                                                                       
Query: 185 acacagaacccaagaaccaagacctatactgcctcctcatacccaacacacacacactgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acacagaacccaagaaccaagacctatactgcctcctcatacccaacacacacacactgg 444

                                                                       
Query: 245 aacctgcacacagtcctcaaagggcaatgcctgtcaggatatccttgagacccttttggc 304
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacctgaacacagtcctcaaagggcaatgcctgtcaggatatccttgagacccttttggc 504

                                                                       
Query: 305 cccatgcttcgctcatgtcctttagagcctctagtgtctgtccctcagaaccctgcaccc 364
           ||||||||||||||||||||||||||||||||||||||||||||                
Sbjct: 505 cccatgcttcgctcatgtcctttagagcctctagtgtctgtccc---------------- 548

                                           
Query: 365 acagaaccctgaacaccacccctcctcagaat 396
           ||||||||||||||||||||||||||||||||
Sbjct: 549 acagaaccctgaacaccacccctcctcagaat 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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