Query= MSMg01no362_i12.b1 MSMg01no362_i12.b1 CHROMAT_FILE:
MSMg01no362_i12.b1 PHD_FILE: MSMg01no362_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:56 2005
(379 letters)
>mm_chr5_122710365_122711142
Length = 778
Score = 638 bits (330), Expect = 0.0
Identities = 364/380 (95%), Gaps = 11/380 (2%)
Strand = Plus / Plus
Query: 5 gaattccacctctgtcc-tttcccatgcactgggaactgagaagccttgcttcgcttaca 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacctctg-ccatttcccatgcactgggaactgagaagccttgcttcgcttaca 263
Query: 64 tccaaagagacacacacaaagcaccctgactaattcaagtccccagagaaagctgattcg 123
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 tccaaagagacgcacacaaagcaccctgactaattcaagtccccagagagagctgattcg 323
Query: 124 ggggctggggaggcaacctagtggggacaggggcaggggaggcggcctagcaggaacagg 183
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggggctggggaggcagcctagtggggacaggggcaggggaggcggcctagcaggaacagg 383
Query: 184 ggctggggacgcagcctagtggggaacgtacttgcttctgaagggtgattttaaagaagc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggctggggacgcagcctagtggggaacgtacttgcttctgaagggtgattttaaagaagc 443
Query: 244 gtgatatccagcatggatttcaaaagcaaaccttttt----ccaggctctgatgtgtatc 299
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 atgatatccagcatggatttcaaaagcaaacc-----aagcccaggctctgatgtgtatc 498
Query: 300 tgcaacagggcactgggcaggggaggagacaagaggatgctagccatctgtcaaccgggg 359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgcaacagggcaccgggcaggggaggagacaagaggatgctagccatctgtcaaccgggg 558
Query: 360 atcgggggtaggctaggggg 379
||||||||||||||||||||
Sbjct: 559 atcgggggtaggctaggggg 578
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 778
Length adjustment: 9
Effective length of query: 370
Effective length of database: 769
Effective search space: 284530
Effective search space used: 284530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_i12.g1 MSMg01no362_i12.g1 CHROMAT_FILE:
MSMg01no362_i12.g1 PHD_FILE: MSMg01no362_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:56 2005
(391 letters)
>mm_chr5_122861705_122862495
Length = 791
Score = 729 bits (377), Expect = 0.0
Identities = 387/391 (98%), Gaps = 2/391 (0%)
Strand = Plus / Minus
Query: 1 actctgtagaccaaactgcaactcagagattcacctgcctctgcctcctgagtgctggca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 actctgtaaaccaaactgcaactcagagattcacctgcctctgcctcctgagtgctggca 542
Query: 61 ttaaaggcgtgcacacagccaagcacacagccaagccagactaggcttaaactagacgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttaaaggcgtgcacacagccaagcacacagccaagccagactaggcttaaactagacgtt 482
Query: 121 aaaggctcagcacactgcgggtcacctgtgaactggagctgtggagccaaagcaaagtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaaggctcagcacactgcgggtcacctgtgaactggagctgtggagccaaagcaaagtgg 422
Query: 181 aaggccacagatgattcacctcagcactgacacagaacagatgtggcctggaaattacgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaggccacagatgattcacctcagcactgacacagaacagatgtggcctggaaattacgc 362
Query: 241 cctcctaatggagtggtcaccctaacatctgtaaacacaaaggaactcattgctttcagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cctcctaatggagtggtcaccctaacatctgtaaacacaaaggaactcattgctttcagc 302
Query: 301 gtgagtttttctggactgaaagccaacttttttttttttttttaattattaagacttcca 360
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 301 gtgagtttttctggactgaaagccaactttttttatttttt--aattattaagacttcca 244
Query: 361 gtactaatagttcttaaaagaaggaaaaaaa 391
|||||||||||||||||||||||||||||||
Sbjct: 243 gtactaatagttcttaaaagaaggaaaaaaa 213
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space: 298724
Effective search space used: 298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
