Query= MSMg01no362_i17.b1 MSMg01no362_i17.b1 CHROMAT_FILE:
MSMg01no362_i17.b1 PHD_FILE: MSMg01no362_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:57 2005
(585 letters)
>mm_chr5_18841443_18842427
Length = 985
Score = 669 bits (346), Expect = 0.0
Identities = 420/474 (88%), Gaps = 47/474 (9%)
Strand = Plus / Minus
Query: 112 tccttgacactttgtgtttaccaaacaaggtatccatctatccttctgtctgtctgtcta 171
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 tccttggcactttgtgtttaccaaacaaggtatccatctatccttctgtctgtctgtcta 926
Query: 172 aacatcaagtatgtattcatacatctgtccatctacttgtctattgtcttttaatgcaga 231
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 925 aacatcaagtatgtattcatgcatctgtccatctacttgtctattgtcttttaatgcaga 866
Query: 232 tagtctgtctgtctattatttcaatctatctatctatctatctatctatctatctatcta 291
|||||||||| ||||||||||||||| | |||||||||||||
Sbjct: 865 tagtctgtctatctattatttcaatc-----------------a---atctatctatcta 826
Query: 292 tctatctatctatctatctatctatctatctatccatctatctatctatctatctatcat 351
||||||||||||||||||||||||||||||| ||
Sbjct: 825 tctatctatctatctatctatctatctatct---------------------------at 793
Query: 352 ctatctacacatacacacatataaacacatatgtgtatgagtgtgtacatgtgtataata 411
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 792 ctatctacacatacacacatataaatacatatgtgtatgagtgtgtacatgtgtataata 733
Query: 412 tgttataaatgctaagcatacagaaacttattaatcattcttgatcttaatgaaagaatt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tgttataaatgctaagcatacagaaacttattaatcattcttgatcttaatgaaagaatt 673
Query: 472 aattatactgataaaactaaaggacataacttacaaacatcataagttatgctttaatag 531
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aattataccgataaaaccaaaggacataacttacaaacatcataagttatgctttaatag 613
Query: 532 attttattggaaaagatacatttgaacacaaattaccattttccaaatcctgta 585
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 612 attttattggaaaagatacatttgaacacaaattaccattttccaagtcctgta 559
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_i17.g1 MSMg01no362_i17.g1 CHROMAT_FILE:
MSMg01no362_i17.g1 PHD_FILE: MSMg01no362_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:57 2005
(502 letters)
>mm_chr5_18671686_18672587
Length = 902
Score = 948 bits (490), Expect = 0.0
Identities = 499/502 (99%)
Strand = Plus / Plus
Query: 1 ttatatttgtagttacaacgattagcacttagcaaagatgctattattccattactaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatatttgtagttacaacgattagcacttagcaaagatgctattattccattactaatt 260
Query: 61 gtcttctattcactaaaaattaaaataatcagagacttttaaaaattgaaacagatccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gtcttctattcactaaaaattaaaataatcagagacttttaaaaattgaaacatatccaa 320
Query: 121 gacatgtaacaaagaagacatagtaataaactgatgaaaaacttatcctcagttcagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacatgtaacaaagaagacatagtaataaactgatgaaaaacttatcctcagttcagaag 380
Query: 181 aaatcaagtaatctcttgataccatctatttttttaaaggttatcctaaactgaagcagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatcaagtaatctcttgataccatctatttttttaaaggttatcctaaactgaagcagc 440
Query: 241 acttggatatttttcaaaccagaatttctgtcaaagtttattatatggatttttaacatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttggatatttttcaaaccagaatttctgtcaaagtttattatatggatttttaacatc 500
Query: 301 aagttacaaaaacatctattttaccttttacagaagaaaagatgtttaaaatcccagatt 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 aagttacaaaaacatctattttaccttttacagtagaaaagatgtttaaaatcccagatt 560
Query: 361 aatttatgcaaacaatttttcattactttaacaacattgtcactttatttttaagttact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatttatgcaaacaatttttcattactttaacaacattgtcactttatttttaagttact 620
Query: 421 tttttattagatattttcttcatttatatttcaaatgctatccacaaagtctcctatatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttattagatattttcttcatttatatttcaaatgctatccacaaagtctcctatatc 680
Query: 481 ctcccccgccctgctcccaacc 502
|||||| |||||||||||||||
Sbjct: 681 ctcccctgccctgctcccaacc 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
