Query= MSMg01no362_l17.b1 MSMg01no362_l17.b1 CHROMAT_FILE:
MSMg01no362_l17.b1 PHD_FILE: MSMg01no362_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:12 2005
(533 letters)
>mm_chr5_89171485_89172415
Length = 931
Score = 998 bits (516), Expect = 0.0
Identities = 526/530 (99%), Gaps = 2/530 (0%)
Strand = Plus / Minus
Query: 4 ggaattcacttctaacccccaaacctaaactatactagctacattaatcctagcaggaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ggaattcacttctaacccccaaacctaaactatactagctacattaatcctagcaggaaa 672
Query: 64 gtcgttactgtaattaccatgttatctacctaaaatatatacaaacttcctctacgttct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gtcgttactgtaattaccatgttatctacctaaaatatatacaaacttcctctacgttct 612
Query: 124 ctaatttaactcaggaggagaaaaaaaaaaaacctttaagttgtaactaatccagctctc 183
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctaatttaactcaggaggag--aaaaaaaaaacctttaagttgtaactaatccagctctc 554
Query: 184 cacaataaaccaaccattctggaactataatcaatgaaaacaaaccagactgtatctatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cacaataaaccaaccattctggaactataatcaatgaaaacaaaccagactgtatctatg 494
Query: 244 aaaacaaaaaattataatattagtaattttaccttttttcaaccctgtttttcattttaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aaaacaaaaaattataatattagtaattttaccttttttcaaccctgtttttcattttaa 434
Query: 304 tacacagaagtgtattagctttaagatgcagatacacttttatgtcaataaaatacaaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tacacagaagtgtattagctttaagatgcagatacacttttatgtcaataaaatacaaaa 374
Query: 364 atataagagcaaggggaaaagaagctcaatgtttttctactccaactatgggaagcattt 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 373 atataagagcaaggggaaaagaagctcaatgtttttctactccaactatgggaagcatct 314
Query: 424 gcactcaatcttaatgcagaaggaattctgggtaaacataatagtatgactgatgtgatc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gcactcaatcttaatgcagaaggaattctgggtaaacataatagtatgactgatgtgatc 254
Query: 484 aaattttagaatgtatatagatatagatataggtgtgtgtgtgtgtgtgt 533
||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 253 aaattttagaatgtatatagatatagatataggtgggtgtgtgtgtgtgt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 931
Length adjustment: 10
Effective length of query: 523
Effective length of database: 921
Effective search space: 481683
Effective search space used: 481683
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_l17.g1 MSMg01no362_l17.g1 CHROMAT_FILE:
MSMg01no362_l17.g1 PHD_FILE: MSMg01no362_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:12 2005
(552 letters)
>mm_chr5_89043042_89043992
Length = 951
Score = 969 bits (501), Expect = 0.0
Identities = 540/553 (97%), Gaps = 4/553 (0%)
Strand = Plus / Plus
Query: 1 aaaccagccaggcaggagcagatgcaggggccttgcagggatgttgcctacttgcttgct 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 202 aaaccagccaggcaggagcagatgcaggg-ccttgcagggatgttgcctacttgcttgct 260
Query: 61 cctcacagttgctcggccagctttcttacagctcccagtatcactagtccaggtggtgcc 120
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcacagttgcttggcctgctttcttacagctcccagtatcactagtccaggtggtgcc 320
Query: 121 acacacagtgggcggccctccccagtgagtcaccaagaaaatgttctcctgggttgccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacacagtgggcggccctccccagtgagtcaccaagaaaatgttctcctgggttgccat 380
Query: 181 acagcccagtcttatgaaggcagtttctcagtagagagtccctcctctgagttgcctcca 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagcccagtcttatggaggcagtttctcagtagagagtccctcctctgagttgcctcca 440
Query: 241 gatttatcaaatagacataaaaactaacaagcacagagctagttggtattggtaccaata 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 gatttatcaaatagacataaaaactaacaagcacagagctggttggtattggtaccaata 500
Query: 301 aagtaaatagtacatttgtagtagcttgtataagcacttcatccttgcccccgccctggc 360
|||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 aagtaagtagtacatttgcagtagcttgtataagcacttcatccttgcccccaccctggc 560
Query: 361 tctccacacactatcaaacagaggag-gggctgggaatggctgctgagcctggctgtagc 419
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||
Sbjct: 561 tctccacacactatcaaacagagg-gtggg-tgggaatggctgctgagcctggctgtagc 618
Query: 420 acagcaggaagctgggccaggggcccagataggtagatcatctcagatacattgaaggct 479
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 619 atagcaggaagctgggccaggggcccagataggtagatcatctcagatacactgaaggct 678
Query: 480 tatgctgggttgataaagtaattcaattttactcttaagaggattaataatggaagctaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tatgctgggttgataaagtaattcaattttactcttaagaggattaataatggaagctaa 738
Query: 540 catctttttctac 552
|||||||||||||
Sbjct: 739 catctttttctac 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 951
Length adjustment: 10
Effective length of query: 542
Effective length of database: 941
Effective search space: 510022
Effective search space used: 510022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
