BAC Information

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BAC

Clone NameMSMg01-362O20
Chromosome5 (Build37)
Map Location 61,771,066 - 61,771,421
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041498, LOC666597, EG666610
Downstream geneLOC100041524, G6pd2, LOC100041543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362O20.T7 (MSMg01no362_o20.b1)MSMg01-362O20.TJ (MSMg01no362_o20.g1)
ACCAG471494AG471495
length750772
length of high quality
(start - end)		534 (50 - 583)482 (79 - 560)
definitionCHROMAT_FILE: MSMg01no362_o20.b1 PHD_FILE: MSMg01no362_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:28 2005CHROMAT_FILE: MSMg01no362_o20.g1 PHD_FILE: MSMg01no362_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTGGCAAATCAGAGAGAAGACAGATTTAGCTGAGGCCAGG
AATATGAAGTGCCTGAAGGAGACAATCTAGTAGCCCACTTCCATGGCTCA
CACCATAGTAATTCTGAAAATCCTGTTTTCACTATAACTTTAAAAAATAA
TATTAAGTTAAGACTGCTGGTCTTCTTATGAGGTAGCCCTCCTCCTTAGC
TTCTGACAGCTTTTCCCTAATTCAATCACAGTCGTTTCTGACTTTAGTCC
AACGATTGGTTATAAGTATCTGCATCTGTCTCAGACAGCTGTTTGGTGGG
ACTCTCAGGGAACAGCCTTGCTATGCTCCTGTCTCTAAGTACACAGTCTC
ATCAATAATAGTGTCAGGCCTTGGAGCCTCCCTTTGAGATGGATCCCAAG
TTGGGCCTGTCACTGGACTGCCTTTCTATCAGCCTCTTCTCCATATTTTT
CTCTATAGNTCTTTTTAGACAGGAACAATTCAAGGTCAAAAATTTTGATT
CTGGATTAATAACCCTGTTTCTCCACTTGATGCTCTGGCTTTCTGCTGTA
CTTGAGGCCCCAAAAAAAGGGAAGGGCTGGCCAGGGCGAGGGGACATCCT
CTTTGGATGAGGGAAAAGGGAATAAGGATGAGGAACCGTACAAGGGGCGA
CCACCAGTAAAGTACACCTCTGACTTATAATAAACACCCACTTATCTTCA


NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTA
AGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATATAGAA
AATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCACCCTG
AGTGAGGGAACACATTTCCCAAGGGACCTCCCACCATATGTACTCCCTGA
TAAGTGGATAATAACCCCAAAACCTAGGAAACCCCAGAAACATTTTCCTT
AACCCCCAAAAAGGAAAACTGGAAGGGGGGAACTAAGCCCCCTCTTAAAA
AGTGGAAAAAAAAAACCTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_o20.b1 MSMg01no362_o20.b1 CHROMAT_FILE:
MSMg01no362_o20.b1 PHD_FILE: MSMg01no362_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:28 2005
         (534 letters)



>mm_chr5_61771066_61771999
          Length = 934

 Score =  634 bits (328), Expect = 0.0
 Identities = 349/356 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   attcagtggcaaatcagagagaagacagatttagctgaggccaggaatatgaagtgcctg 66
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 356 attcagtggcaaatcagagagaagacagatttagctgaggccaggaataggaagtgcctg 297

                                                                       
Query: 67  aaggagacaatctagtagcccacttccatggctcacaccatagtaattctgaaaatcctg 126
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 296 aaggagacaatctagtagcccacctccatggctcacaccatagtaattctgaaaatcctg 237

                                                                       
Query: 127 ttttcactataactttaaaaaataatattaagttaagactgctggtcttcttatgaggta 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttttcactataactttaaaaaataatattaagttaagactgctggtcttcttatgaggta 177

                                                                       
Query: 187 gccctcctccttagcttctgacagcttttccctaattcaatcacagtcgtttctgacttt 246
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 176 gccctcctccttagcttctgacagattttccctaattcaatcacagtcgtttctgacttt 117

                                                                       
Query: 247 agtccaacgattggttataagtatctgcatctgtctcagacagctgtttggtgggactct 306
           |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 116 agtccaacgattggttataagtatctgcatctgtctcagacaactgtttgttgggactct 57

                                                                   
Query: 307 cagggaacagccttgctatgctcctgtctctaagtacacagtctcatcaataatag 362
           |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 56  cagggaacagccatgctatgctcctgtctctaagtacacagtctcatcagtaatag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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