BAC Information

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BAC

Clone NameMSMg01-362P19
Chromosome5 (Build37)
Map Location 111,457,778 - 111,623,994
singlet/doubletdoublet
Overlap geneTtc28
Upstream geneLOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2
Downstream genePitpnb, Mn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362P19.T7 (MSMg01no362_p19.b1)MSMg01-362P19.TJ (MSMg01no362_p19.g1)
ACCAG471539AG471540
length752765
length of high quality
(start - end)		480 (50 - 529)508 (78 - 585)
definitionCHROMAT_FILE: MSMg01no362_p19.b1 PHD_FILE: MSMg01no362_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:33 2005CHROMAT_FILE: MSMg01no362_p19.g1 PHD_FILE: MSMg01no362_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,457,778 - 111,458,254)(111,623,488 - 111,623,994)
sequence
NNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTATTGTTTTCCACTTTTTGCCTAGGGAAAGAAAAAGAAAAC
CCCACACAAACTGTAACGCCCATGTCCTCTCAGGTCTCAGCTAAGTGGTC
AGTGGAAGTGTGTATTTTAGCAGAAGAGACCATTAAGGTCTGGAATGTTT
AGTGGATGCAACCAGAAATAAACAGTGAAAAGTTTGGAAGTAGCTCTCCT
GTGCTCGCTCCAAAAGATGAGCTACATCCTGTTCCTCAGCGGCCTGCTTC
ATAAGGCCAGGTATTGTTCAGCTCATGCTCTGCAGTCCCTGCCCACGAGG
CAAGGACTGGAAAAGAGACATAAAGTTAACATTTGAAAGTATAGCAGAAA
TGGGCAGATGCCAACCGGCGGAGTTGGGTGAGTCTTTCTGTAGAAAATGG
GGTCCCAGCTGGGCTTTGAAAGACTGGGAGAGCTTGGCAGACATGCTGGA
GGGGGAAGTATTTTTGGCAGAAATGGAGCATAGAACAGAAATAGTAAAAT
GTATAATGTGATCAGAAACAGGGAGCACAACTGTGGATGGAATTAAGACT
GCACAGAGGCAACGGGATATAGGTAATTAGTGTAATACTCGCCCCGCCAG
GGGTTGTTATAAATCCCGAACTCTTTGTAAGCCCACTATAAGTTCCTGGA
ATAGGGCCTTTTTGAAAAGTCTCCCTGGCCAAGCGGGGCTTTCATTTTTA
GG

NGGCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAAAGGCATGGCCTAGCACA
GGACATCCTGAGATGCTTCTCAGGCAGGAGGCATCTGCAGTGGCTTTGGT
CCTGGGGAAGGCTTGCTGCCTTGCAGCTGGGCAGAGCAGGGTCATTGCTC
CAGGCTGGTCTATAACCTAGCTCACTCATCTTTAGGCTGGTGGGTGTGGC
GAGTGCCCCATGGCTGCAGCCTATCCATCGATGCTCCTGTTGGGATGGAA
AGTCTGACAGATGAGCTCTGAGACCCAGACTCTTAACCAATTCTGACGCT
TGACCTTAGCAGAGTCACAAAGCCCCTTACTCCTGGGACACTTGTAAGTG
ACAAAAAGTTCTATGAGACACAAGTGTGAGTTCACGCTACCAAGCCAAGG
GCTTCCAGTGAGGTCTCACAGGCTGTGACAGGAGACATGCTTTGAATATG
TCTCTGCATGTCATTCTGAGGATTTCCAGAGAAAAACACTCAGTGGATCT
AGATTCATTACTGCCTGTAGACATACCTATAAAGCCGGACCTCGTTCCTC
TTGACGAGAATCCAACATACAAATGGACATGTAAAAAGCATGGAAGAGAA
ATGACTGTTACCANCATTTTTCCCTACCCAAAAAATTTGTTATAAGAATC
CTCCCGAATTTCCAGGTGGACATGGTTCTTTCCGGGGCATATTTCCTTCC
CAAACTTAATTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_p19.b1 MSMg01no362_p19.b1 CHROMAT_FILE:
MSMg01no362_p19.b1 PHD_FILE: MSMg01no362_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:33 2005
         (480 letters)



>mm_chr5_111457575_111458454
          Length = 880

 Score =  884 bits (457), Expect = 0.0
 Identities = 472/477 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctattgttttccactttttgcctagggaaagaaaaagaaaaccccacacaaact 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctattgttttccactttttgcctagggaaagaaaaagaaaaccccacacaaact 263

                                                                       
Query: 64  gtaacgcccatgtcctctcaggtctcagctaagtggtcagtggaagtgtgtattttagca 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtaacgcccatgtcctctcgggtctcagctaagtggtcagtggaagtgtgtattttagca 323

                                                                       
Query: 124 gaagagaccattaaggtctggaatgtttagtggatgcaaccagaaataaacagtgaaaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaagagaccattaaggtctggaatgtttagtggatgcaaccagaaataaacagtgaaaag 383

                                                                       
Query: 184 tttggaagtagctctcctgtgctcgctccaaaagatgagctacatcctgttcctcagcgg 243
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 384 tttggaagtagctctcctgtgctcgctccagaagatgagctacatcctgttcctcagcgg 443

                                                                       
Query: 244 cctgcttcataaggccaggtattgttcagctcatgctctgcagtccctgcccacgaggca 303
           |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 444 cctgcttcataaggccaggtattgttcagctcgtgctctgcggtccctgcccacgaggca 503

                                                                       
Query: 304 aggactggaaaagagacataaagttaacatttgaaagtatagcagaaatgggcagatgcc 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 504 aggactggaaaagagacataaagttaacatttgaaagtatagcagaaatgggcagacgcc 563

                                                                       
Query: 364 aaccggcggagttgggtgagtctttctgtagaaaatggggtcccagctgggctttgaaag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaccggcggagttgggtgagtctttctgtagaaaatggggtcccagctgggctttgaaag 623

                                                                    
Query: 424 actgggagagcttggcagacatgctggagggggaagtatttttggcagaaatggagc 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 actgggagagcttggcagacatgctggagggggaagtatttttggcagaaatggagc 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_p19.g1 MSMg01no362_p19.g1 CHROMAT_FILE:
MSMg01no362_p19.g1 PHD_FILE: MSMg01no362_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:33 2005
         (508 letters)



>mm_chr5_111623288_111624194
          Length = 907

 Score =  928 bits (480), Expect = 0.0
 Identities = 501/508 (98%), Gaps = 1/508 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaaaggcatggcctagcacaggacatcctgagatgcttctcaggcaggaggcatctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tctgaaaggcatggcctagcacaggacatcctgagatgcttctcaggcaggaggcatctg 648

                                                                       
Query: 61  cagtggctttggtcctggggaaggcttgctgccttgcagctgggcagagcagggtcattg 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 cagtggctttgctcctggggaaggcttgctgccttgcagctgggcagagcagggtcattg 588

                                                                       
Query: 121 ctccaggctggtctataacctagctcactcatctttaggctggtgggtgtggcgagtgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ctccaggctggtctataacctagctcactcatctttaggctggtgggtgtggcgagtgcc 528

                                                                       
Query: 181 ccatggctgcagcctatccatcgatgctcctgttgggatggaaagtctgacagatgagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 527 ccatggctgcagcctatccatcgatgctcctgttgggatggaaagtctgacagctgagct 468

                                                                       
Query: 241 ctgagacccagactcttaaccaattctgacgcttgaccttagcagagtcacaaagcccct 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 467 ctgagacccagactcttaaccaattctgactcttgaccttagcagagtcacaaagcccct 408

                                                                       
Query: 301 tactcctgggacacttgtaagtgacaaaaagttctatgagacacaagtgtgagttcacgc 360
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 407 tactcctgggacacttgtaagtgacaaaaagttctatgagacac-actgtgagttcacgc 349

                                                                       
Query: 361 taccaagccaagggcttccagtgaggtctcacaggctgtgacaggagacatgctttgaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 taccaagccaagggcttccagtgaggtctcacaggctgtgacaggagacatgctttgaat 289

                                                                       
Query: 421 atgtctctgcatgtcattctgaggatttccagagaaaaacactcagtggatctagattca 480
           ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 288 atgtctctgcatgtcattctgagaatttccagagaaaaacactcagtagatctagattca 229

                                       
Query: 481 ttactgcctgtagacatacctataaagc 508
           ||||||||||||||||||||||||||||
Sbjct: 228 ttactgcctgtagacatacctataaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 907
Length adjustment: 10
Effective length of query: 498
Effective length of database: 897
Effective search space:   446706
Effective search space used:   446706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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