BAC Information

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BAC

Clone NameMSMg01-363A07
Chromosome5 (Build37)
Map Location 65,317,237 - 65,475,310
singlet/doubletdoublet
Overlap geneTlr1, Tlr6, 9130005N14Rik, Tmem156
Upstream geneAA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894, LOC100042198, Klf3
Downstream geneKlhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363A07.T7 (MSMg01no363_a07.b1)MSMg01-363A07.TJ (MSMg01no363_a07.g1)
ACCAG471563AG471564
length747746
length of high quality
(start - end)		655 (40 - 694)544 (75 - 618)
definitionCHROMAT_FILE: MSMg01no363_a07.b1 PHD_FILE: MSMg01no363_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:36 2005CHROMAT_FILE: MSMg01no363_a07.g1 PHD_FILE: MSMg01no363_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,317,237 - 65,317,887)(65,474,767 - 65,475,310)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GGCTAATGTCCAGTTTTTGTAGGGATGTCATCTTTGCAGATGTGAGAATT
ATATTCTCAAGGTTTTTTAACTGATTCTTTTGTAAACTAAGTGTTTTCAA
TCTAACTAAGTTTCTACAGTCTTTAAAAACCATGTCTGTTAAAAGGTTAT
CTGTAAAGTCCACATGCAGAAATGGGCTAACTTGGGACGGGCACAGCATG
TGGACCATGTGTGTTCCAGACATTGTAAAGTTTTGGATGTTCATATTGGC
AAAGATACTGTATATGTAACTTTGTTGGAAGCTGAAGACATCAGTGACAA
CTTGATGTATCGACAAAGCCTTCAGAGAAGTGTCAGAATAATTGAACATC
CTGAAGGCAAGTTGACCTTGTAGCTTCACATTTGAAATTGAGAAATATTT
GACTGGCGTATGCCACACTATCTGGAGGATATTAATGAAGGAATTCCACG
TTGTTTCCACATTGTTCAGGGTAAGATTTGAGAGCTTCGGATTCTTTCCA
AGCTTTGACAAAGCACGTAAGAAATAAGAGCAGCCCTGGTCTTCAAGCAC
ACACTTGATGTTAGACAGTTCCAAACCGATCATAGTGCTGACGGACACAT
CCAGAAGAAAACGGAATTCTCTTTTCGACGGGAAAACAATATGCAGAGTC
TCAGTGCTAACGTGCCGAAGAGATTCGGGGTCTTCTTTTTCCCATAN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCTGCAGACCAGGGTGGCCTTGAA
CTCAGAGATCTGCTTGTCTCTGCCTCATGAGTGCTGGGACTAAAGGTGTG
TGACACCACTGTCTGGTGTTATTTTCACTCTTCCATGTGCACAAAGCATC
TTGTACAAACATATGCGTGATCTGTTCTTACAGCAAAAGTTAAGGAAGGA
AAATATAGCTCTTTAGTGTTGTCCTTCGCTTCTCTTTGAAAAGGAGAAAA
TAATTGGCCTGCCCCTTTCTCCAACTCTGTTTTCCTAACTCTATTTAGTA
TTCGGCGTACCTCCTCAGGGAAGGTGCCAACTTGGTACTGAAGTCATTCT
GGGATGCATTTGCATCTCTCAGAGTGGGCAGGTAGAGGTCTGACTCCAGG
AATATTAATGGAGGTAGTTAAATTCACAAAGCCCTGGTTATGGAGGTGGG
AATACAGCCCGCCCAATGCCTAAAGCTGTTGGGGAGGAGGATTTATTTTT
AAAAATTATACCAAGAAAGGCTGTGTCCTCTACTTATTCCTTTTCCAATA
GAATTATTTAAAATTGAGGCTTAAAAACCACATAAAACAACCAGATAGTC
TAATATAGAGGGTATTCTATCCATCCTTGGAAGCTGGCCCTGGTCACTTA
ATTGAATAACACTGCAATGTTCACCGCCAAATTGTCTTCCTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_a07.b1 MSMg01no363_a07.b1 CHROMAT_FILE:
MSMg01no363_a07.b1 PHD_FILE: MSMg01no363_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:36 2005
         (655 letters)



>mm_chr5_65317033_65318087
          Length = 1055

 Score = 1205 bits (623), Expect = 0.0
 Identities = 644/651 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggctaatgtccagtttttgtagggatgtcatctttgcagatgtgagaattata 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattctggctaatgtctagtttttgtagggatgtcatctttgcagatgtgaggattata 264

                                                                       
Query: 65  ttctcaaggttttttaactgattcttttgtaaactaagtgttttcaatctaactaagttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctcaaggttttttaactgattcttttgtaaactaagtgttttcaatctaactaagttt 324

                                                                       
Query: 125 ctacagtctttaaaaaccatgtctgttaaaaggttatctgtaaagtccacatgcagaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctacagtctttaaaaaccatgtctgttaaaaggttatctgtaaagtccacatgcagaaat 384

                                                                       
Query: 185 gggctaacttgggacgggcacagcatgtggaccatgtgtgttccagacattgtaaagttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggctaacttgggacgggcacagcatgtggaccatgtgtgttccagacattgtaaagttt 444

                                                                       
Query: 245 tggatgttcatattggcaaagatactgtatatgtaactttgttggaagctgaagacatca 304
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 445 tggatgttcatattggcaaagatactgtatatgtaactttgggggaagctgaagacatca 504

                                                                       
Query: 305 gtgacaacttgatgtatcgacaaagccttcagagaagtgtcagaataattgaacatcctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgacaacttgatgtatcgacaaagccttcagagaagtgtcagaataattgaacatcctg 564

                                                                       
Query: 365 aaggcaagttgaccttgtagcttcacatttgaaattgagaaatatttgactggcgtatgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaggcaagttgaccttgtagcttcacatttgaaattgagaaatatttgactggcgtatgc 624

                                                                       
Query: 425 cacactatctggaggatattaatgaaggaattccacgttgtttccacattgttcagggta 484
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaactatctggaggatattaatgaaggaattccacgttgtttccacattgttcagggta 684

                                                                       
Query: 485 agatttgagagcttcggattctttccaagctttgacaaagcacgtaagaaataagagcag 544
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agatttgagagcttcagattctttccaagctttgacaaagcacgtaagaaataagagcag 744

                                                                       
Query: 545 ccctggtcttcaagcacacacttgatgttagacagttccaaaccgatcatagtgctgacg 604
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 745 ccctggtcttcaagcacacacttgatgttagacagttccaaaccgatcgtagtgctgacg 804

                                                              
Query: 605 gacacatccagaagaaaacggaattctcttttcgacgggaaaacaatatgc 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gacacatccagaagaaaacggaattctcttttcgacgggaaaacaatatgc 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no363_a07.g1 MSMg01no363_a07.g1 CHROMAT_FILE:
MSMg01no363_a07.g1 PHD_FILE: MSMg01no363_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:36 2005
         (544 letters)



>mm_chr5_65474475_65475418
          Length = 944

 Score = 1013 bits (524), Expect = 0.0
 Identities = 539/544 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgcagaccagggtggccttgaactcagagatctgcttgtctctgcctcatgagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 actctgcagaccagggtggccttgaactcagagatctgcttgtctctgcctcatgagtgc 777

                                                                       
Query: 61  tgggactaaaggtgtgtgacaccactgtctggtgttattttcactcttccatgtgcacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 776 tgggactaaaggtgtgtgacaccactgtctggtgttattttcactcttcaatgtgcacaa 717

                                                                       
Query: 121 agcatcttgtacaaacatatgcgtgatctgttcttacagcaaaagttaaggaaggaaaat 180
           ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 716 agcatcttgtacaaacatatgtgtgatctcttcttacagcaaaagttaaggaaggaaaat 657

                                                                       
Query: 181 atagctctttagtgttgtccttcgcttctctttgaaaaggagaaaataattggcctgccc 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 656 atagctctttagtgttgtcctttgcttctctttgaaaaggagaaaataattggcctgccc 597

                                                                       
Query: 241 ctttctccaactctgttttcctaactctatttagtattcggcgtacctcctcagggaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ctttctccaactctgttttcctaactctatttagtattcggcgtacctcctcagggaagg 537

                                                                       
Query: 301 tgccaacttggtactgaagtcattctgggatgcatttgcatctctcagagtgggcaggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tgccaacttggtactgaagtcattctgggatgcatttgcatctctcagagtgggcaggta 477

                                                                       
Query: 361 gaggtctgactccaggaatattaatggaggtagttaaattcacaaagccctggttatgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 476 gaggtctgactccaggaatattaatggaggtagttaaattcacaaagtcctggttatgga 417

                                                                       
Query: 421 ggtgggaatacagcccgcccaatgcctaaagctgttggggaggaggatttatttttaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ggtgggaatacagcccgcccaatgcctaaagctgttggggaggaggatttatttttaaaa 357

                                                                       
Query: 481 attataccaagaaaggctgtgtcctctacttattccttttccaatagaattatttaaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 attataccaagaaaggctgtgtcctctacttattccttttccaatagaattatttaaaat 297

               
Query: 541 tgag 544
           ||||
Sbjct: 296 tgag 293


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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