BAC Information

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BAC

Clone NameMSMg01-363D12
Chromosome5 (Build37)
Map Location 29,259,138 - 29,440,320
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC231069, Insig1, En2, Cnpy1, Prr8, Shh, LOC100039258
Downstream geneRnf32, EG664949, Lmbr1, EG620572, Gm1040, Hlxb9, LOC619355, Ube3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363D12.T7 (MSMg01no363_d12.b1)MSMg01-363D12.TJ (MSMg01no363_d12.g1)
ACCAG471710AG471711
length746751
length of high quality
(start - end)		556 (61 - 616)511 (78 - 588)
definitionCHROMAT_FILE: MSMg01no363_d12.b1 PHD_FILE: MSMg01no363_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:51 2005CHROMAT_FILE: MSMg01no363_d12.g1 PHD_FILE: MSMg01no363_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,259,138 - 29,259,693)(29,439,810 - 29,440,320)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCC
AGGAGATCCCTCCTAAAGGTAAGAAGGCCCTGGGTTTGAACTCTTGGAAA
TCTTCAAAGCTTGCTGCATTCCAGTCTAGGACCTAGTCAGGCTGAAGGAC
CAGATTGTATCTCAAATCCTAACCTCAGTGGTGCCTGCACTGAGGGGGAA
CCACTCAATAGCGGTGTGAGGAAGATGCCAGATTCTTGGAGAGAGGAACA
CTGATGCTCACCTTAGAACGGGGACCTCTAAGGAGGCTAATTCACACCAA
GGTCCACCCAAAGATTCCCAGGACATCCCACGCTGCCACCCTGACACTCA
CCATCTTAGCCCCCTGGTCCTTTCCTCACTTCCATTTAAGATGAGAATAA
AGAAGCCTGCCCTGCCATTGCTGCAAGTCCAGTTAGATGATGGTTCTACT
TTTGCACCTTCCTCATATGAGACATTCATGTCACTAGGAATACAGACTTG
GTGGCAGAGCATGACACAGAACACAGGGAATGGCTCTGCCTGGATGCATC
TTCCACAGAGTATGGAATGGGATGGGCCTCATGAATGGACCTAGGAAGAG
AGGGGGTGAGCACATAAGGGGTGGCAGAAGTCAAGCTGTGCAAGTCTGGA
AATGCAGTGAATGCTTTGGGGACTTGAGGATCACTCTGCTGCTTGTGAAC
AGGTATGGGACATGTATGTGAGGTCAGGAATATCCTGCTGGAACAN

NNNCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGAAAGATAAGCATCGAGTGACC
ACAAGTGCCTCTCACAAGTGTGGGATGGGACATGAGAGTAAAGAAAGAAG
TATTAGCCATGTGTAAGGGGAAGAGCAGAGAAGCAAGGGAAACAGGACTG
ATATGACACAGGTGTCTTGTATACATGTAAGAAATGTCACTGTGAACTAT
TACTCTGGTTAACCAATATATGCTCATAAAAGAAAATTAAAGGTCTAGTG
TACTTTAGAAGCGTGAGCTTATCTTTAGTTCCTTCCTTAAACTAAATAAT
TGAGTTATCGAAGACTTGAAACTGCTTCTACTTCTACGAATTAGAGTGAA
TTCAGTCTAATCCCGAAAAATAAATTTATGGACAGGGTAGGAATGCATTT
TCCAGAGTATTTGACATTGCTCATCACTTATCCTTTCGACTGCTCAGCTA
TGGGAAATACTCTTGAGGAGGATATACTTGGCAGGTGTGTGCAGCTAGGT
CACATATGCTTCCTAGAAGGGATGCCTGAGGACATCATGTGTTTCCAGGG
TGATATGTTGTGGTTAGATGTAGAAATCGCTCACTTCCTGGACTGAATTT
TCCATTCCCATGGGGACTGAATTTGGACTCTGGNTCTTGCGATACTTACT
ATAATCTCAGTTCTGGGCCATTTGCCTGAAGAAACTGTGTCCTTGGAGGG
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_d12.b1 MSMg01no363_d12.b1 CHROMAT_FILE:
MSMg01no363_d12.b1 PHD_FILE: MSMg01no363_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:51 2005
         (556 letters)



>mm_chr5_29258938_29259893
          Length = 956

 Score = 1067 bits (552), Expect = 0.0
 Identities = 555/556 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctaaaggtaagaaggccctgggtttgaactcttggaaatcttcaaagcttgctgcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctaaaggtaagaaggccctgggtttgaactcttggaaatcttcaaagcttgctgcatt 260

                                                                       
Query: 61  ccagtctaggacctagtcaggctgaaggaccagattgtatctcaaatcctaacctcagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagtctaggacctagtcaggctgaaggaccagattgtatctcaaatcctaacctcagtg 320

                                                                       
Query: 121 gtgcctgcactgagggggaaccactcaatagcggtgtgaggaagatgccagattcttgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgcctgcactgagggggaaccactcaatagcggtgtgaggaagatgccagattcttgga 380

                                                                       
Query: 181 gagaggaacactgatgctcaccttagaacggggacctctaaggaggctaattcacaccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gagaggaacactgatgctcaccttagaacggggacctctaaggaggctaatccacaccaa 440

                                                                       
Query: 241 ggtccacccaaagattcccaggacatcccacgctgccaccctgacactcaccatcttagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtccacccaaagattcccaggacatcccacgctgccaccctgacactcaccatcttagc 500

                                                                       
Query: 301 cccctggtcctttcctcacttccatttaagatgagaataaagaagcctgccctgccattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccctggtcctttcctcacttccatttaagatgagaataaagaagcctgccctgccattg 560

                                                                       
Query: 361 ctgcaagtccagttagatgatggttctacttttgcaccttcctcatatgagacattcatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgcaagtccagttagatgatggttctacttttgcaccttcctcatatgagacattcatg 620

                                                                       
Query: 421 tcactaggaatacagacttggtggcagagcatgacacagaacacagggaatggctctgcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcactaggaatacagacttggtggcagagcatgacacagaacacagggaatggctctgcc 680

                                                                       
Query: 481 tggatgcatcttccacagagtatggaatgggatgggcctcatgaatggacctaggaagag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggatgcatcttccacagagtatggaatgggatgggcctcatgaatggacctaggaagag 740

                           
Query: 541 agggggtgagcacata 556
           ||||||||||||||||
Sbjct: 741 agggggtgagcacata 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no363_d12.g1 MSMg01no363_d12.g1 CHROMAT_FILE:
MSMg01no363_d12.g1 PHD_FILE: MSMg01no363_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:52 2005
         (511 letters)



>mm_chr5_29439610_29440520
          Length = 911

 Score =  903 bits (467), Expect = 0.0
 Identities = 500/511 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaaagataagcatcgagtgaccacaagtgcctctcacaagtgtgggatgggacatgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 711 tgaaagataagcatcgagtgaccacaagtgcctctcacaagtgtgggatgggacatggga 652

                                                                       
Query: 61  gtaaagaaagaagtattagccatgtgtaaggggaagagcagagaagcaagggaaacagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gtaaagaaagaagtattagccatgtgtaaggggaagagcagagaagcaagggaaacagga 592

                                                                       
Query: 121 ctgatatgacacaggtgtcttgtatacatgtaagaaatgtcactgtgaactattactctg 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ctgatatgacacaggtgtgttgtatacatgtaagaaatgtcactgtgaactattactctg 532

                                                                       
Query: 181 gttaaccaatatatgctcataaaagaaaattaaaggtctagtgtactttagaagcgtgag 240
           | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 531 gctaaccaatatatgctcataaaataaaattaaaggtctagtgtactttagaagcgtgag 472

                                                                       
Query: 241 cttatctttagttccttccttaaactaaataattgagttatcgaagacttgaaactgctt 300
           |  | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 471 cagacctttagttccttccttaaactaaataattgagttattgaagacttgaaactgctt 412

                                                                       
Query: 301 ctacttctacgaattagagtgaattcagtctaatcccgaaaaataaatttatggacaggg 360
           |||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 411 ctacttcttctaattagagtgaattcagtctgatcccgaaaaataaatttatggacaggg 352

                                                                       
Query: 361 taggaatgcattttccagagtatttgacattgctcatcacttatcctttcgactgctcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 taggaatgcattttccagagtatttgacattgctcatcacttatcctttcgactgctcag 292

                                                                       
Query: 421 ctatgggaaatactcttgaggaggatatacttggcaggtgtgtgcagctaggtcacatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ctatgggaaatactcttgaggaggatatacttggcaggtgtgtgcagctaggtcacatat 232

                                          
Query: 481 gcttcctagaagggatgcctgaggacatcat 511
           |||||||||||||||||||||||||||||||
Sbjct: 231 gcttcctagaagggatgcctgaggacatcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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