Query= MSMg01no363_g13.b1 MSMg01no363_g13.b1 CHROMAT_FILE:
MSMg01no363_g13.b1 PHD_FILE: MSMg01no363_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:06 2005
(607 letters)
>mm_chr5_63322886_63323887
Length = 1002
Score = 998 bits (516), Expect = 0.0
Identities = 534/542 (98%), Gaps = 5/542 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaaaagatctgacatttttagtgtgtgttatgctaacctttgaccattggtttt 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gaattcaaaaagatctgaaatttttagtgtgtgttatgctaacctttgaccattggtttt 478
Query: 65 aagtagcatataaaagagccaaccaaaaattcattgggcttctaattaatttaaatgttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 477 aagtagcatataaaagagccaaccaaaaattcattgggcttctaattaatttaaatg-tt 419
Query: 125 ttttgatgctgcctttcctaattctagtcccagattcattgaaacaaaactatcctttaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttttgatgctgcctttcctaattctagtcccagattcattgaaacaaaactatcctttaa 359
Query: 185 atgtcaaccatgactggtgtttctctgaaggcttctggataattataaaatcagttcatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atgtcaaccatgactggtgtttctctgaaggcttctggataattataaaatcagttcatt 299
Query: 245 tgaggattagaaatgggtgttttaatttcatagtttatttaatacaagataatttgaaac 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 298 tgaggattagaaatgggtgttttaatttcatattttatttaatacaagataatttgaaac 239
Query: 305 tcttctgtctgtgaaaaatacataatttttccttgttctttttttaaactaaatatttta 364
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tct----tctgtgaaaaatacataatttttccttgttctttttttaaactaaatatttta 183
Query: 365 tttattaacattccaaatgtttcttctgctcccagtcacctggaagctcccagaaactaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tttattaacattccaaatgtttcttctgctcccagtcacctggaagctcccagaaactaa 123
Query: 425 accaccaaccaaaaaaataagcaactttgaaaaccatattactaaccagcatagctgagc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 accaccaaccaaaaaaataagcaactttgaaaaccatattactaaccagcatagctgagc 63
Query: 485 cttctagaataattacatggaattagctcacatgtgcatgtttggtgactccgttatttc 544
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cttttagaataattacatggaattagctcacatgtgcatgtttggtgactccgttatttc 3
Query: 545 ca 546
||
Sbjct: 2 ca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1002
Length adjustment: 10
Effective length of query: 597
Effective length of database: 992
Effective search space: 592224
Effective search space used: 592224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_g13.g1 MSMg01no363_g13.g1 CHROMAT_FILE:
MSMg01no363_g13.g1 PHD_FILE: MSMg01no363_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:06 2005
(576 letters)
>mm_chr5_63178932_63179907
Length = 976
Score = 1083 bits (560), Expect = 0.0
Identities = 572/576 (99%)
Strand = Plus / Plus
Query: 1 acttttattgagaagagaactgcaaatatgtgcacttcattcattttaatactttataac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttttattgagaagagaactgcaaatatgtgcacttcattcattttaatactttataac 260
Query: 61 tgtcaaatcctttcatatataatttttatttactccttggaactaatgcatgttaatgtg 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcaaatcctttcatatataattttcatttactccttggaactaatgcatgttaatgtg 320
Query: 121 gagttgaatgacttacagtcttgggagctcaatgtgtcttttaatttattcttgtttggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagttgaatgacttacagtcttgggagctcaatgtgtcttttaatttattcttgtttggt 380
Query: 181 taatgaaatccagaggattaaacatattatttttgtagttgagagtttctctcatacatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatgaaatccagaggattaaacatattatttttgtagttgagagtttctctcatacatt 440
Query: 241 gtatctgtgaatttcactgaaatgtcccttttctaataagttatttgaaaccacaagtac 300
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagctgtgaatttcactgaaatgtcccttttctaataagttatttgaaaccacaagtac 500
Query: 301 aattttcaaggaatacaggctttaaatttgtgtgtagtttataagaaactagcaatactc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattttcaaggaatacaggctttaaatttgtgtgtagtttataagaaactagcaatactc 560
Query: 361 cttaatataaaaagggaaatattttttcttttcaatatattataacacctggagaaaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttaatataaaaagggaaatattttttcttttcaatatattataacacctggagaaaaat 620
Query: 421 tataaaatgaattttgatttatgggtcacctaacattttaaacattttaaaagaatgtct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tataaaatgaattttgatttatgggtcacctaacattttaaacattttaaaagaatgtct 680
Query: 481 atccttcaaatgcagacattttatttttggatttagagaacatctatgcatgtatagaga 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 atccttcaaatgcagacattttatttttggatttagagaacatctatgcatgtataaaga 740
Query: 541 agaatctatgctaatagttttgaaaatacttttgtg 576
||||||||||||||||||||||||||||||||||||
Sbjct: 741 agaatctatgctaatagttttgaaaatacttttgtg 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
