BAC Information

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BAC

Clone NameMSMg01-363G18
Chromosome5 (Build37)
Map Location 31,392,539 - 31,393,067
singlet/doubletsinglet
Overlap geneSlc30a3
Upstream geneTyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad
Downstream geneDnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363G18.T7 (MSMg01no363_g18.b1)MSMg01-363G18.TJ (MSMg01no363_g18.g1)
ACCAG471865AG471866
length776792
length of high quality
(start - end)		532 (33 - 564)34 (79 - 112)
definitionCHROMAT_FILE: MSMg01no363_g18.b1 PHD_FILE: MSMg01no363_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:07 2005CHROMAT_FILE: MSMg01no363_g18.g1 PHD_FILE: MSMg01no363_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCCAGGGA
GCAACATCTGCCTTGTGCAGTGTACCACTGTGTCGAGTCCATGTGCGTCC
CACTCACTAAGAACCCTCATCACCCAAGAAGAGCATCCACTCGCTCCCTC
ACTCACTCTGCAATCCTGAGCCGCCTCTACATAGATGTTTGTCAGTGTCT
AGTCTCAGCTCCCTCACCTGCCAGCTGTGTGCCCCTACCCGTTCTTTCCC
CCAATGAGCCTCACATTTCACTTTTATTTGTTAAAACATTAGACCACACT
GCTGTAACATACTTTGCAGATACTGAATTCTATGGCTTTGTGTGTGGGTC
TGGCTGTTCAGTAGAGCTCCACATGCCTGCAAAGCTTTGGGCATAATGGG
TCTAGCAAAGGGACAGAGATGGGCCCATCTGCTGAGGCAGGCACTGCAAG
TGACCAGTTCAGGCTCCCGGGTGAACGTGTTGCCTGTCTCAGTCTTTTCA
CAGAGCCCTCAGAGCCCCTGCCTGAGGAGCCCAAGCTTGAGGGGATGGCC
TTCCACCACTGCCACAAGGACCCCGTGCCTCAGTCAGGCCTCTCTCCAGA
GAGGGTGCAAGCCCGGAGGCAGCTGTATGCCGCCTGCGCTGTGTGCTTCA
TCTTCATGGCCGGGGGAGGTGGGTGGTAAATTTGGAGGACACCCGCCAGT
CCCATATTCCGTAATTTCTAAGGCCCCCCTCCCCCAGAAACCTGGGTTTC
TTTATAAAAAAAAAAAGTAGAAAAAG

NAACATGAATCTGGAAGGCCGGGGGGNCGCCTGTTTCAACATGGTGGNGA
CCNANAGAATTTCAAAAAAATTGCTCACTGAGGAAAACGAACGGCTGAGA
AGCACCTGAAAAAGTGTTCTGCATCCTTAATCATCAGGTAAGTGCAAATC
ATAACAGCCCTGAGGTGCGCGGCTCATAACTGTCAGAATGCCTAAGATCA
AAAACTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGATTATTA
CTCCTCCATTGCTGGTGGGATTTCAAGCTTGTACAACCACTCTGGAAATC
AGGCAGGCGTTTTTTTTTTTTACTACAGGAGCCCACATAACCTCTCCTGG
TCATATGTTTTTATGTTCCTACTGATTATATATATATGCTCCTCTATGTT
CATGTTATTCCTATTTATTATATTTATAAGCTTTAAAGTAACCTAAGTCC
TTTTACAGAGGATTTGTATTACTATATTTTTTACTTTTACTCTTTGGATT
TCTACTCCGTTATTACTTATATTGATTTTTTTAAATTTCTATTGAATAAT
TATGATCACCATTTCATTAATCGTTATAGTTAATAACCTTCTCTATCAAC
GAATTAACATGTTATTATACTTTCTTTTTCTTTTTTTTTACTATTATCCC
CTTATTTTTTGTTTTAACCTCTATAATCTTTTATTATTTTTTTCTTTTCT
TTTTTATATATGTTATATTTTTTTTATTTTTTATTTTATTATCTTCGGTT
ATATTGCATTAATATATAGTATAATATACTGTTCTTCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_g18.b1 MSMg01no363_g18.b1 CHROMAT_FILE:
MSMg01no363_g18.b1 PHD_FILE: MSMg01no363_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:07 2005
         (532 letters)



>mm_chr5_31392336_31393267
          Length = 932

 Score = 1023 bits (529), Expect = 0.0
 Identities = 529/529 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccccagggagcaacatctgccttgtgcagtgtaccactgtgtcgagtccatgtg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ggaattccccagggagcaacatctgccttgtgcagtgtaccactgtgtcgagtccatgtg 673

                                                                       
Query: 64  cgtcccactcactaagaaccctcatcacccaagaagagcatccactcgctccctcactca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cgtcccactcactaagaaccctcatcacccaagaagagcatccactcgctccctcactca 613

                                                                       
Query: 124 ctctgcaatcctgagccgcctctacatagatgtttgtcagtgtctagtctcagctccctc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ctctgcaatcctgagccgcctctacatagatgtttgtcagtgtctagtctcagctccctc 553

                                                                       
Query: 184 acctgccagctgtgtgcccctacccgttctttcccccaatgagcctcacatttcactttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 acctgccagctgtgtgcccctacccgttctttcccccaatgagcctcacatttcactttt 493

                                                                       
Query: 244 atttgttaaaacattagaccacactgctgtaacatactttgcagatactgaattctatgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atttgttaaaacattagaccacactgctgtaacatactttgcagatactgaattctatgg 433

                                                                       
Query: 304 ctttgtgtgtgggtctggctgttcagtagagctccacatgcctgcaaagctttgggcata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctttgtgtgtgggtctggctgttcagtagagctccacatgcctgcaaagctttgggcata 373

                                                                       
Query: 364 atgggtctagcaaagggacagagatgggcccatctgctgaggcaggcactgcaagtgacc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atgggtctagcaaagggacagagatgggcccatctgctgaggcaggcactgcaagtgacc 313

                                                                       
Query: 424 agttcaggctcccgggtgaacgtgttgcctgtctcagtcttttcacagagccctcagagc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agttcaggctcccgggtgaacgtgttgcctgtctcagtcttttcacagagccctcagagc 253

                                                            
Query: 484 ccctgcctgaggagcccaagcttgaggggatggccttccaccactgcca 532
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ccctgcctgaggagcccaagcttgaggggatggccttccaccactgcca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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