Query= MSMg01no363_k18.b1 MSMg01no363_k18.b1 CHROMAT_FILE:
MSMg01no363_k18.b1 PHD_FILE: MSMg01no363_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:27 2005
(508 letters)
>mm_chr5_149598013_149598920
Length = 908
Score = 920 bits (476), Expect = 0.0
Identities = 497/504 (98%)
Strand = Plus / Plus
Query: 5 gaattcttggttggttccggtctcaattctaccaatatccatctgacttcctttctccat 64
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttggttggtgctggtctcaattctaccaatatccatctgacttcctttctccat 264
Query: 65 caggttttaatctttttatggtctaaagatgccttgaaattccattcccaccccagcaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caggttttaatctttttatggtctaaagatgccttgaaattccattcccaccccagcaca 324
Query: 125 aagcagatggtaaaagagtgatgaacacagacatataatcataagtaacactcacttggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagcagatggtaaaagagtgatgaacacagacatataatcataagtaacactcacttggg 384
Query: 185 acttcaaaagcaggggacagaattatcgtatacagttttcatcatggtgactgatgccat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acttcaaaagcaggggacagaattatcgtatacagttttcatcatggtgactgatgccat 444
Query: 245 ttgtgtgtaattagcctttacttcctactcacagtttaattatgaaactgatatgcaaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgtgtgtaattagcctttacttcctactcacagtttaattatgaaactgatatgcaaat 504
Query: 305 ttatgctaatagtttgcctaagcaaatgggtccactgcatttgtgggaacacttgaatga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttatgctaatagtttgcctaagcaaatgggtccactgcatttgtgggaacacttgaatga 564
Query: 365 attttaaacacacagaattgtagtttcatagaattctgggaagggtgggcagtgcccctg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attttaaacacacagaattgtagtttcatagaattctgggaagggtgggcagtgcccctg 624
Query: 425 gggccaccacaggtcctaaggcagtggttctcaacctgtgggtcgcaaccctgtggggct 484
| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 625 gagccaccacaggtcctaaggcagtgattctcaacctgtgggtcacaaccctgtggggct 684
Query: 485 gggggcgttgggtgtcctatagca 508
||||||||||| ||||| ||||||
Sbjct: 685 gggggcgttggatgtcccatagca 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_k18.g1 MSMg01no363_k18.g1 CHROMAT_FILE:
MSMg01no363_k18.g1 PHD_FILE: MSMg01no363_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:28 2005
(535 letters)
>mm_chr5_149779862_149780795
Length = 934
Score = 845 bits (437), Expect = 0.0
Identities = 501/527 (95%), Gaps = 11/527 (2%)
Strand = Plus / Minus
Query: 18 gccttttccctcctggacaattagcagttaaatatttaccagccgccactgtgtgtaaac 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 gccttttccctcctggacaattagcagttaaatatttaccagccgccactgtgtgtaaac 875
Query: 78 aagatccaagaggaagcagttttattttgcaagactcaacgtagagttcagataaagctg 137
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 874 aagatccaagaggaagcagttttattttgcaagactcaatgtagagttcagataaagctg 815
Query: 138 ggcagatagaatcacagataagattgtgttgtggccacccttcaacccccaacggggttt 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 ggcagatagaatcacagataagattgtgttgtggccacccttcaacccccaacggggttt 755
Query: 198 ctctgtatttccctggatgacctggaactcaatttgtagaccattctgtctttggactca 257
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 754 ctctgtatttccctggatgacctggaactcaatttgtagaccaggctggctttggactca 695
Query: 258 aagattcgcctgcctctgcctccagagtgctgggattaaaggcgtgcacaaccacaaccc 317
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 694 aagattcgcctgcctcagcctccagagtgctgggattaaaggcatgcaccaccacaaccc 635
Query: 318 ggcctttccctaatggaaggttctagaaggactgattatcatgacttcatgaggaatgat 377
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 634 ggcctttccctaatggaaggttctagaaggcctgattatcatgacttcatgaggaatgac 575
Query: 378 ccacacatcctc-gaacagcaacacgataggcttttcttcttattac--------tattt 428
||||||| || | ||||||||||||||||||||||||||||| || | | |||
Sbjct: 574 ccacaca-ccccggaacagcaacacgataggcttttcttcttctt-cttttttttttttt 517
Query: 429 ttttaatttttcatccctaaatggagatattgggtacaaagcttctgggtattgaatcaa 488
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 516 ttttaatttttcatccctaaatggagatattggttacaaagcttctgggtattgaatcta 457
Query: 489 ggtacttaatgggtatcaggagtctacaaaagtgaattttctgatat 535
||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggtacctaatgggtatcaggagtctacaaaagtgaattttctgatat 410
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 934
Length adjustment: 10
Effective length of query: 525
Effective length of database: 924
Effective search space: 485100
Effective search space used: 485100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
