Query= MSMg01no364_d14.b1 MSMg01no364_d14.b1 CHROMAT_FILE:
MSMg01no364_d14.b1 PHD_FILE: MSMg01no364_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:15 2005
(248 letters)
>mm_chr5_5370170_5370817
Length = 648
Score = 416 bits (215), Expect = e-121
Identities = 236/243 (97%), Gaps = 2/243 (0%)
Strand = Plus / Minus
Query: 5 ggaattcacttgagactgtactcttgcagcttgagggctgggtcagtttagctatgcagc 64
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggaattcacttgagactggaatcttgcagcttgagggctgggtcagtttagctatgcagc 387
Query: 65 aaggtgtggcagctctctccttcctccagtttatgagctttgggctccttatctcaggga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 386 aaggtgtggcagctctctccttcctccagtttatgagctttgggctccttatcacaggga 327
Query: 125 cctgccgggagaggcctgcactggagtgtgggtgcaactcccattggcttgaggatctct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cctgccgggagaggcctgcactggagtgtgggtgcaactcccattggcttgaggatctct 267
Query: 185 ctcaggtgggc-ataagggtttgacctcgaacagaaatgtgttagttatttactctttga 243
|||||||| || | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 266 ctcaggtgtgcga-aagggtttgacctcgaacagaaatttgttagttatttactctttga 208
Query: 244 ctg 246
|||
Sbjct: 207 ctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no364_d14.g1 MSMg01no364_d14.g1 CHROMAT_FILE:
MSMg01no364_d14.g1 PHD_FILE: MSMg01no364_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:15 2005
(473 letters)
>mm_chr5_5210274_5211145
Length = 872
Score = 899 bits (465), Expect = 0.0
Identities = 471/473 (99%), Gaps = 1/473 (0%)
Strand = Plus / Plus
Query: 1 attcaactcaggacctctggaagagctgccaatgcccttaactgttgatccatctctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcaactcaggacctctggaagagctgccaatgcccttaactgttgatccatctctcca 260
Query: 61 gccctgaatgtctatttattaaaagacatgaaaagccatgaaggaacgggacacaacgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccctgaatgtctatttattaaaagacatgaaaagccatgaaggaacgggacacaacgta 320
Query: 121 tggtcctggccacatggggacaaagacagcaaggctgcttgcctctgagatgacacagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtcctggccacatggggacaaagacagcaaggctgcttgcctctgagatgacacagct 380
Query: 181 agacagtgtgctatatacggtgacattaaacagaagtgaacttattttcatgacaaatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacagtgtgctatatacggtgacattaaacagaagtgaacttattttcatgacaaatgc 440
Query: 241 actagcaggttacactccttgaactcatacagatgactttagacctgtgcaaactgaagc 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actagcaggttacactccatgaactcatacagatgactttagacctgtgcaaactgaagc 500
Query: 301 ttaagtatccaactgtctagctgaaaagataatttcccgtgtcctgactttaaaacactg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaagtatccaactgtctagctgaaaagataatttcccgtgtcctgactttaaaacactg 560
Query: 361 tcctggagccatcattcagagccttgtgctgtggtttttttcctttgggaggtgacttga 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 tcctggagccatcattcagagccttgtgctgtggtttttt-cctttgggaggtgacttga 619
Query: 421 tcataaaggctctgacttcatcaatgaattatatattaatggatctatcacag 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcataaaggctctgacttcatcaatgaattatatattaatggatctatcacag 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 872
Length adjustment: 10
Effective length of query: 463
Effective length of database: 862
Effective search space: 399106
Effective search space used: 399106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
