Query= MSMg01no365_a11.b1 MSMg01no365_a11.b1 CHROMAT_FILE:
MSMg01no365_a11.b1 PHD_FILE: MSMg01no365_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:25 2005
(498 letters)
>mm_chr5_128449161_128450061
Length = 901
Score = 864 bits (447), Expect = 0.0
Identities = 485/499 (97%), Gaps = 5/499 (1%)
Strand = Plus / Plus
Query: 4 ggaattcccacctcccactcttagctgcacaccagtcatgctcacaatagtggaatgaaa 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccacctccaactcttagctgcacaccagtcatgctcacaatagtggaatgaaa 263
Query: 64 gactggtgaaaccctgagctaaaataaacccttctctcttaagttgct-cttgttagata 122
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 264 gactggtgaaaccctgagctaaaataaacccttctctcttaagttgcttct-gttagata 322
Query: 123 ttttgctacagtaaagtaacaaatacaatgtcgtagccattcactgtaaatgacttataa 182
|||||| ||||||||||||||||||||| | | ||||||||||||||||||||||| |||
Sbjct: 323 ttttgcgacagtaaagtaacaaatacaacggcttagccattcactgtaaatgacttgtaa 382
Query: 183 aaata---agttgttattttcctcaattctcataagctggaatgttaccaccaccaactt 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaatacacagttgttattttcctcaattctcataagctggaatgttaccaccaccaactt 442
Query: 240 ccaaacaaaagctaataaaaagtttgcccaaatgttatctaactagactttacttgcaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ccaaacaaaagctaataaaaagtttgcccaaatgttatctaactagactttacttgcaca 502
Query: 300 aatatattcaaactcagacttcagcatcccttgaaatgttcagtgttcttagcatctacc 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 503 aatatattcaaactcagacttcagcatcccttgaaatgttcagtgttcttagcacctatc 562
Query: 360 aataaaattacacttattggaaaatgttgtgcgaaagaaaaaaattacaaaggccaacat 419
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 563 aataaaattacacttattggaaaatgttttgcgaaagaaaaaaattacaaaggccaacat 622
Query: 420 gactaaaccagttgataaatatgagtctgatgttttgccctcacaatgtgacacagttgg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gactaaaccagttgataaatatgagtctgatgttttgccctcacaatgtgacacagttgg 682
Query: 480 caaatatatacatgcacca 498
|||||||||||||||||||
Sbjct: 683 caaatatatacatgcacca 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 901
Length adjustment: 10
Effective length of query: 488
Effective length of database: 891
Effective search space: 434808
Effective search space used: 434808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_a11.g1 MSMg01no365_a11.g1 CHROMAT_FILE:
MSMg01no365_a11.g1 PHD_FILE: MSMg01no365_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:25 2005
(502 letters)
>mm_chr5_128616065_128616967
Length = 903
Score = 930 bits (481), Expect = 0.0
Identities = 499/509 (98%), Gaps = 7/509 (1%)
Strand = Plus / Minus
Query: 1 ctagtctggtcacatacattttctttgtcacttttaggtttcttctggctctttatatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctagtctggtcacatacattttctttgtcacttttaggtttcttctggctctttatatta 500
Query: 61 ctgaaaaaaaaattgagcgaaaaatctaaaggatgaattgaggaaggtagtacattgttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctgaaaaaaaaattgagcgaaaaatctaaaggatgaattgaggaaggtagtacattgttc 440
Query: 121 ctggaatgcagttctaaattccaaaactcagttgtttggagaatacatttatttcccatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctggaatgcagttctaaattccaaaactcagttgtttggagaatacatttatttcccatg 380
Query: 181 gtatggaggtggctattgctgctttgttttagcccccactcccttagttcattaccaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtatggaggtggctattgctgctttgttttagcccccactcccttagttcattaccaaaa 320
Query: 241 gcacttgaaaccaattcagggatggcttggcatcagtcgctctccattctcctttaccag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gcacttgaaaccaattcagggatggcttggcatcagtcgctctccattctcctttaccag 260
Query: 301 aatctgggtcacctgcagcagctctcatctgtgcccttccctt-------tttttttttt 353
|||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 259 aatctgggtcacctgcagcagctctcatctgtgcccttcctttgtttttttttttttttt 200
Query: 354 tttttggactggaaaagactgagaggaaaagaggaagccggtgtctgagctctaccctgg 413
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttttttgactggaaaagactgagaggaaaagaggaagccggtgtctgagctctaccctgg 140
Query: 414 atgttcctgtggtaggagcagctcagacagcggaacttgttggtctcacatgatctcagt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 atgttcctgtggtaggagcagctcagacagcggaacttgttggtctcacatgatctcagt 80
Query: 474 ccaatgagcccaggggatgcaatttgcca 502
|||||||||||||| ||||||||||||||
Sbjct: 79 ccaatgagcccaggagatgcaatttgcca 51
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 903
Length adjustment: 10
Effective length of query: 492
Effective length of database: 893
Effective search space: 439356
Effective search space used: 439356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
