Query= MSMg01no365_c12.b1 MSMg01no365_c12.b1 CHROMAT_FILE:
MSMg01no365_c12.b1 PHD_FILE: MSMg01no365_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:35 2005
(506 letters)
>mm_chr5_24477286_24478192
Length = 907
Score = 822 bits (425), Expect = 0.0
Identities = 470/485 (96%), Gaps = 1/485 (0%)
Strand = Plus / Minus
Query: 23 cccaacataaactctacgttgctgtgttgcagggccacatggctgctcctcaggagacat 82
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 707 cccaacataaacactacgttgctgtgttgcggggccacatggctgctcctcaggagacat 648
Query: 83 gggcacatacaccattgccatcctatgtcttttactctggtctgtggcaagagcatctgg 142
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 647 aggcacatacaccattgccattctatgtcttctactctggtctgtggcaagagcatctgg 588
Query: 143 ggcttcggggaacaattaatgtctcactggacaggttttgctgagggcagaagcaatgac 202
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 587 ggcttcgggggacaattaatgtctcactggacaggttttgctgagggcagaagccctgac 528
Query: 203 accagccattaaccaaaactctgactttattgaatcagattctgtggggccagtaagagt 262
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 accagccattaaccgaaactctgactttattgaatcagattctgtggggccagtaagagt 468
Query: 263 aagatggtgttcattacgtgtctcccagcacctggctctgtggagaaccggaggggagaa 322
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aagatggtgtttactacgtgtctcccagcacctggctctgtggagaaccggaggggagaa 408
Query: 323 gtggtttaagatttggagccagacagccctaggcatgtgtcctgctcagccacatggccc 382
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 407 gtggtttaagatttagagccagacagccctaggcctgtgtcctgctcagccacatggccc 348
Query: 383 cagatggcttcagagaagcctccgattcctcttttgctctctctctctctgcctcatggt 442
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 347 cagatggcttcagagaagcctccgattcctcttttgctctctctccctctgcctcatggt 288
Query: 443 gaactgtactccc-acagtggtgtttcaggtgtgcacacactctctactcccatcccacc 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gaactgtactccccacagtggtgtttcaggtgtgcacacactctctactcccatcccacc 228
Query: 502 tgcct 506
|||||
Sbjct: 227 tgcct 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 907
Length adjustment: 10
Effective length of query: 496
Effective length of database: 897
Effective search space: 444912
Effective search space used: 444912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_c12.g1 MSMg01no365_c12.g1 CHROMAT_FILE:
MSMg01no365_c12.g1 PHD_FILE: MSMg01no365_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:35 2005
(544 letters)
>mm_chr5_24297938_24298882
Length = 945
Score = 1000 bits (517), Expect = 0.0
Identities = 538/545 (98%), Gaps = 1/545 (0%)
Strand = Plus / Plus
Query: 1 actgtgtagatcaggctggccacagactcagagagatatttgcctgcctctgccttccag 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtgtagatcaggctggccgcagactcagagagatatttgcctgcctctgccttccag 260
Query: 61 atgctgagattaaaagcatgcatcattgtggctggcagaaaaagatgacaaattttggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgctgagattaaaagcatgcatcattgtggctggcagaaaaagatgacaaattttggaa 320
Query: 121 ggcttttggcccctggacaggggt-gggggtgcagtaggggttgcacagacagagactag 179
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcttttggccactggacaggggtggggggtgcagtaggggttgcacagacagagactag 380
Query: 180 ggtctgcaaactgcctctcagactcttaggatcccaggaccagctccccatgtctgcctt 239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtctgcaaactgcttctcagactcttaggatcccaggaccagctccccatgtctgcctt 440
Query: 240 catcctcctgtctcttctcctctgccctgccccgtccttcctctcttgcttctcccactc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcctcctgtctcttctcctctgccctgccccgtccttcctctcttgcttctcccactc 500
Query: 300 tcctgcctcagcaccagccagggagtaggagctatgtgagaattcactgtttggctcctt 359
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 501 tcctgcctcagcaccagccagggagtgggagctatgtgagaattcattgtttggctcctt 560
Query: 360 catgccacccttcccaaaaggggaagctttggccttcctcttgctagctggcagatttat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgccacccttcccaaaaggggaagctttggccttcctcttgctagctggcagatttat 620
Query: 420 gtcaccaagaaatccccgtagtcactcaggggcaggattggtatctctgtgccataccct 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 gtcaccaagaaatccccgtagtcactcaggggcagggttggtatctctgtgccataccct 680
Query: 480 ggatttgtccttgcagggtctccaatgccactgacccctggaaagggatctggggtcttc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggatttgtccttgcagggtctccaatgccactgacccctggaaagggatctggggtcttc 740
Query: 540 ctgac 544
|||||
Sbjct: 741 ctgac 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 945
Length adjustment: 10
Effective length of query: 534
Effective length of database: 935
Effective search space: 499290
Effective search space used: 499290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
