Query= MSMg01no365_d16.b1 MSMg01no365_d16.b1 CHROMAT_FILE:
MSMg01no365_d16.b1 PHD_FILE: MSMg01no365_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:40 2005
(399 letters)
>mm_chr5_83036262_83037060
Length = 799
Score = 702 bits (363), Expect = 0.0
Identities = 387/395 (97%)
Strand = Plus / Plus
Query: 5 gaattctctctttagctctgcttcccattttttaatatggttatttggttctctggagtc 64
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctctttagctctgtttcccattttttaatatggttatttggttctctggagtc 264
Query: 65 tacctttatgagttctttgtatattttgaatattagccttctattggatgtaaaataaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 tacctttatgagttctttgtatattttgaatattagccttctattggatgtaaaaaaaaa 324
Query: 125 gaattattatcttttatatattgggtgccataaaacatgaaatgataatatttcaaaata 184
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 gaattattatcttttatatattgggagccataaaacatgaaatgataatatttcaaaata 384
Query: 185 aattttctctgtcacctatctcagtacactgttactttttgattagtatttgttctcttt 244
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 385 aattttctctgtcacctatctcagtacactgatactttttgattagtatgtgttctcttc 444
Query: 245 aaatagattacctccccaaagcatgcataatacaaaagcagctttagataaaaaaaaaaa 304
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 445 aaatagattacctccccaaagcatgcagaaaacaaaagcagctttagataaaaaaaaaaa 504
Query: 305 tgtgttggttgccattttgtcctattgaaagtgtccttttccttacagaacctttgcaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtgttggttgccattttgtcctattgaaagtgtccttttccttacagaacctttgcaat 564
Query: 365 tttatgagtttataattgtctattgttgatcttag 399
|||||||||||||||||||||||||||||||||||
Sbjct: 565 tttatgagtttataattgtctattgttgatcttag 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space: 308100
Effective search space used: 308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_d16.g1 MSMg01no365_d16.g1 CHROMAT_FILE:
MSMg01no365_d16.g1 PHD_FILE: MSMg01no365_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:40 2005
(500 letters)
>mm_chr5_83265154_83266054
Length = 901
Score = 878 bits (454), Expect = 0.0
Identities = 484/494 (97%), Gaps = 1/494 (0%)
Strand = Plus / Minus
Query: 5 ggtagaatcctggtggttgatccat-tgtgaaataacagtttcatcccctcctgccacaa 63
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 698 ggtagaatcccggtggttgatccatgtgtgaaataacagtttcatcccctcctgccacaa 639
Query: 64 gaggggaacacaagaaaagtggcaaaagggctctatatctgggaattgctactaaaactt 123
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 638 gaggggaacacaagaaaagtggcaaaggggctctatatctgggaactgctactaaaactt 579
Query: 124 aaatattttctaagccttcaaatgtgttaaatatataattaattatcagcttttaaacac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aaatattttctaagccttcaaatgtgttaaatatataattaattatcagcttttaaacac 519
Query: 184 tagcatcacatgcttaaagatgtttttgaacgaggtttaagctagtctttaaattagtca 243
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 518 tagcatcacatgcttaaagatgtttttgaatgaggtttaagctagtctttaaattagtca 459
Query: 244 tgtgactcaaatgtatgttttcactagaagaatttaaaagaaaaagttatctattgtgct 303
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 458 tgtgactcaaatgtatgttttcactaggagaatttaaaagaaaaagttatctattgtgct 399
Query: 304 tgcttcactcattttcatgctccccagaaaagctgaattgtaacctttttctatttgctc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tgcttcactcattttcatgctccccagaaaagctgaattgtaacctttttctatttgctc 339
Query: 364 tttaagttttgacacgtctgctttagttgacagtagtatattaaatctattttggtggta 423
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tttaagttttgacacttatgctttagttgacagtagtatattaaatctattttggtggta 279
Query: 424 tttttgtttggcatatttcattaatccactgttttcaaattcaccaaaatttaattttaa 483
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 278 tttttgtttggcatatttcattaatccactgttctcaaattcaccaaaatttatttttaa 219
Query: 484 attcattgcttctt 497
||||||||||||||
Sbjct: 218 attcattgcttctt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 901
Length adjustment: 10
Effective length of query: 490
Effective length of database: 891
Effective search space: 436590
Effective search space used: 436590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
