BAC Information

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BAC

Clone NameMSMg01-366K11
Chromosome5 (Build37)
Map Location 33,857,491 - 33,857,760
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea, 4933407H18Rik, LOC672284
Downstream gene2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366K11.T7 (MSMg01no366_k11.b1)MSMg01-366K11.TJ (MSMg01no366_k11.g1)
ACCAG474316AG474317
length788774
length of high quality
(start - end)
277 (50 - 326)482 (81 - 562)
definitionCHROMAT_FILE: MSMg01no366_k11.b1 PHD_FILE: MSMg01no366_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:33 2005CHROMAT_FILE: MSMg01no366_k11.g1 PHD_FILE: MSMg01no366_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATAAATCC
GCGGAATTCAGCTCTGTTCTTACCCATAATGACACTGTCCCAGGTGCCCA
GGGTGCAAATGGCTAGCCTTAGCAGCAAGGACAGTGGAGTGGGAATCAGT
GTGTCAGCTTTGCCTGTGAAGAATGTGGGTATAGGGGGTGTCTTTGGGTT
TTCTGACTGCCAGTCTTGGAAGCTTACAGTACCCCTTTATCCCAGCCTCA
CGTGGGCACTGTGAGTGGAAAGAATGACCATTTTGTCTAACTTGTGAGGA
TATAGACTGGTGGGGAAGCAGGCTTTTTATTAGTGGACAGGTGGGAGTGG
ACACAGGTGGGGAGGTAGGCAGGTGAGCAGTGGACAGGTGGGAGTGGACA
CAGGTGGGGAGGCAGGCAGGCGACCAGTGGACAGGTGGGAGTGGACACAG
GTGGTGAGGCAGGCTTGTGACATTGCATTGGTGTTATTGTATATTTGTGT
CTGATCTCCTCAGTTTAGGATGTTTCGCCCTCCTTGCATATCTTTCCTTG
CCTTTTTGATCCCGTTAATTGTTTCTGCCCCCTATTCATTTCTTTGATTA
CCGCCCTTCTTTTTCTTTCTTTTCCCTTTTTTTTCGTTCGGTTGATTTTT
TTCCTTATTTATTTCTTATTTTTTTTTTTTTTCTTCTATTCTCTTTATCC
ATTACCCCTCCCCGTTTTCTTCTCGTTTTTTTTTTTTTCTTCTTTTTTTC
CCACATCTTCCTTTTTTTTTACTCTTCTTTTCTCTCCG
NNNNGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCTACAACCCTAGACAT
ACCATCCTGATGAAAGAAAATAATACTTGAGACCTGTGATTCATGTAATT
TATGTCAAATAGCCCAAAGAGTTGTTTGTGTGCTTTGAAACCTGGGGCTG
AGAACATAGCAGAACAGGCCAGGACATGCCTGGGCAGGCCTGTTGTTAAG
ACATTCCTGAGGCTGCTTGGCCATAAAGATAAAGAAAGATAAAGAGAATG
ACATGCCAGACTGGCCTGGCGCCTCCTTATCTCCCACCCTTCTGACCTAA
GTTAAATGTTAACAGGCTGCTGATGTTTAAATGGACCTATCATGTGAAAC
CGCGCCAATTCTTCCCTGCTGATGTTTAAATGAACCAATCATGTGAAACT
GCGCCAATTCCTCCCCCAGCCCCACCCCTTTTCTTTAAAAACCACTAGCT
TCCAAGCCTCATGGTCAAATCCACTGTCTCCTGCATGAGCTCCGCCATTA
AAGGGTCTGTGGGAAAGCATTCCGGACTCCCTGGNCAGCCGGACAGAAAT
CTGTGCCAGGCAGTCTACAAGCCCATATTTGGTGGAAGACTTCGCCCTTA
ACCCCCGATTGTCTGTATCAAGCCTGCCTGGGGAGGGGAAGGAAACTTGG
GGCGATTGAATTAGGCCAGGTTTTGGCTTTAATGGAAAAAAAACTTTTTT
TCCCTAAAGGTCCGCGCCTCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_k11.b1 MSMg01no366_k11.b1 CHROMAT_FILE:
MSMg01no366_k11.b1 PHD_FILE: MSMg01no366_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:33 2005
         (277 letters)



>mm_chr5_33857287_33857963
          Length = 677

 Score =  487 bits (252), Expect = e-142
 Identities = 266/272 (97%), Gaps = 4/272 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagctctg--ttcttacccataatgacactgtcccaggtgcccagggtgcaaatg 62
           |||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gaattcagctctgcct--ttacccataatgacactgtcccaggtgcccagggtgcaaatg 417

                                                                       
Query: 63  gctagccttagcagcaaggacagtggagtgggaatcagtgtgtcagctttgcctgtgaag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gctagccttagcagcaaggacagtggagtgggaatcagtgtgtcagctttgcctgtgaag 357

                                                                       
Query: 123 aatgtgggtatagggggtgtctttgggttttctgactgccagtcttggaagcttacagta 182
           ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 356 aatgtgggtatagggggtgtctttgggttttctgactgccactcttggaaacttacagta 297

                                                                       
Query: 183 cccctttatcccagcctcacgtgggcactgtgagtggaaagaatgaccattttgtctaac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cccctttatcccagcctcacgtgggcactgtgagtggaaagaatgaccattttgtctaac 237

                                           
Query: 243 ttgtgaggatatagactggtggggaagcaggc 274
           ||||||||||||||||||||||||||||||||
Sbjct: 236 ttgtgaggatatagactggtggggaagcaggc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)