Query= MSMg01no367_m02.b1 MSMg01no367_m02.b1 CHROMAT_FILE:
MSMg01no367_m02.b1 PHD_FILE: MSMg01no367_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:00 2005
(465 letters)
>mm_chr5_83519927_83520792
Length = 866
Score = 801 bits (414), Expect = 0.0
Identities = 454/478 (94%), Gaps = 20/478 (4%)
Strand = Plus / Plus
Query: 4 gagaagtccctaaa-aaatgtttaacatctttattcatcagggaaacgaaaatcaaaaca 62
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gagaagtccctaaagaaatgtttaacatctttattcatcagggaaacgaaaatcaaaaca 252
Query: 63 accttaagattccacctcacaccagtcagaatgactatcttttctttattcttagagtct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 accttaagattccacctcacaccagtcagaatgactatcttttctttattcttagagtct 312
Query: 123 atcagtacttgttagtgtttttccttcagttttttttttttattattattttgtaacagt 182
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 313 atcagtacttgttagtgtttttccttcagtttttttt----attattattttgtaacagt 368
Query: 183 ttcagaacctgaacataatatctttgacatatttggaaaaaagaag-------------- 228
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttcagaacctgaacataatatctttgacatatttggaaaaaagaagcatgtgtgtgtgtg 428
Query: 229 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaatctctatatgcaattttatcatatt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaatctctatatgcaattttatcatatt 488
Query: 289 caaaactctccaagatttttagataaaatagatcaaaacattttaactaagattgtaaga 348
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 489 caaaactctccaagatttttaggtaaaatagatcaaaacattttaactaagattgtaaga 548
Query: 349 acttgggtgacaaatgaattatgctgtcttttt-cgtgtgctaaagcactaaacaaacag 407
|||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 549 acttggttgacaaatgaattatgctgtcttttttcatgtgctaaagcactaaacaaacag 608
Query: 408 tgaaggaattttgagaagagacctgtgaaagaatcgttatagttgatggattctgtga 465
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 609 tgaaggaattttgagaagagacctgtgaaagaatagttatagttgatggattctgtga 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 866
Length adjustment: 10
Effective length of query: 455
Effective length of database: 856
Effective search space: 389480
Effective search space used: 389480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_m02.g1 MSMg01no367_m02.g1 CHROMAT_FILE:
MSMg01no367_m02.g1 PHD_FILE: MSMg01no367_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:00 2005
(491 letters)
>mm_chr5_83721758_83722648
Length = 891
Score = 874 bits (452), Expect = 0.0
Identities = 461/464 (99%)
Strand = Plus / Minus
Query: 26 ttaactaccaatttgaaacagtgccaggagagtgctttagcctctatgatcaagtctgac 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 ttaactaccaatttgaaacagtgccaggagagtgctttagcctctatgatcaagtctgac 832
Query: 86 atagttttcaacaaataatcagcatatattcgtggtaattattatgttggcattgtacta 145
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 831 atagttttcaacaaataatcagcatatatttgtggtaattattatgttggcattgtacta 772
Query: 146 tgtagtaccaatactttgctgtagatcatttctttcagtatattaatattatgataaaaa 205
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tgtagtaccaatactttgctatagatcatttctttcagtatattaatattatgataaaaa 712
Query: 206 tatttgttcttaataaataattgtatggtataaaatattgaattttgtcttaaataccca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tatttgttcttaataaataattgtatggtataaaatattgaattttgtcttaaataccca 652
Query: 266 tgaatatataaaacctgcaacaaagttaggttattcataataatacaaaaattcattgtt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tgaatatataaaacctgcaacaaagttaggttattcataataatacaaaaattcattgtt 592
Query: 326 aaatgctgttttatgtttggcagaagcagtccatgtattcagtttggatactttatttaa 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 591 aaatgctgttttatgtttggcagaagcagtccatgtattcagtttggatactttatttta 532
Query: 386 aaaaattacaatatccagtagttcagtgggggagacaagagcctgtgaacctctctgtga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaaaattacaatatccagtagttcagtgggggagacaagagcctgtgaacctctctgtga 472
Query: 446 tatgtggtggacatatttgagtccagtattggctatgtccattg 489
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tatgtggtggacatatttgagtccagtattggctatgtccattg 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
