Query= MSMg01no367_m13.b1 MSMg01no367_m13.b1 CHROMAT_FILE:
MSMg01no367_m13.b1 PHD_FILE: MSMg01no367_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:03 2005
(483 letters)
>mm_chr5_82011538_82012420
Length = 883
Score = 926 bits (479), Expect = 0.0
Identities = 482/483 (99%)
Strand = Plus / Plus
Query: 1 ggcaccatgtcttattcaagatccctgctagagagatattcagttcctgtcaaggcttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcaccatgtcttattcaagatccctgctagagagatattcagttcctgtcaaggcttcc 260
Query: 61 aattgaagttactctctgtggagatcttttcaggcatttcaaaactactatccaataagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattgaagttactctctgtggagatcttttcaggcatttcaaaactactatccaataagg 320
Query: 121 accccagtgctggagcaataaaaccaaatccttggcaaagggaatctcaaaggctgtttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accccagtgctggagcaataaaaccaaatccttggcaaagggaatctcaaaggctgtttc 380
Query: 181 actgtaaatgaaattattgtccagccctattatggagaaaccaaatgttacaaaagagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgtaaatgaaattattgtccagccctattatggagaaaccaaatgttacaaaagagga 440
Query: 241 aaatattaaccaagtgataacaaaaatgaatgttaccgcaataaatctctgttagattcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatattaaccaagtgataacaaaaatgaatgttaccgcaataaatctctgttagattcc 500
Query: 301 aagtctacgttacgattatcttgtgtatgtgaaaggctagagctgtcaaagaggttacaa 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagactacgttacgattatcttgtgtatgtgaaaggctagagctgtcaaagaggttacaa 560
Query: 361 aatttctgacctggctgtcctccatctggtagagcctgcgctctgccactctttggggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatttctgacctggctgtcctccatctggtagagcctgcgctctgccactctttggggaa 620
Query: 421 gcaaggtggcacaagaccattaaccttcttgccagagctttgaaaagaaactgcatttgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcaaggtggcacaagaccattaaccttcttgccagagctttgaaaagaaactgcatttgg 680
Query: 481 aaa 483
|||
Sbjct: 681 aaa 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_m13.g1 MSMg01no367_m13.g1 CHROMAT_FILE:
MSMg01no367_m13.g1 PHD_FILE: MSMg01no367_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:03 2005
(520 letters)
>mm_chr5_82233462_82234382
Length = 921
Score = 940 bits (486), Expect = 0.0
Identities = 510/518 (98%), Gaps = 1/518 (0%)
Strand = Plus / Minus
Query: 4 gatttttacattggaagactgagctatctcaaggatcatttttgttgtgtgggttggaga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 gatttttacattggaagactgagctatctcaaggatcatttttgttgtgtgggttggaga 823
Query: 64 cttcaggacttcttggttttctttaatcccatgctttgttttggttttgatatacttgat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 cttcaggacttcttggttttctttaatcccatgctttgttttggttttgatatacttgat 763
Query: 124 aggtctccccaaatatagatataataaattatttaattattgtgtaagagtttaaaacaa 183
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 762 aggtctccccaaatatagacataataaattatttaatttttgtgtaagagtttaaaacaa 703
Query: 184 ctgatatctttgaaatctcttgttaaaacatttgtgtctaagaataacggttgcatgaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ctgatatctttgaaatctcttgttaaaacatttgtgtctaagaataacggttgcatgaat 643
Query: 244 tttttcagaattagagaaaagctattaattcttactctattagactttttactcataaca 303
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tctctcagaattagagaaaagctattaattcttactctattagactttttactcataaca 583
Query: 304 gatctttttgataaacattttagcattatactattatgataaatccaataataattatac 363
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 582 gatctttttgataaacattttagcattatactattatgataaagccaataataattatac 523
Query: 364 ttactattattatataaaatccttg-tttttttaaagtgtaaatgattttacgttctagg 422
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 522 ttactattattatataaaatccttgttttttttaaagtgtaaatgattttactttctagg 463
Query: 423 catgctttgatttcacaattttgttcctcctacatgtgtgattattcttcaatttgcaaa 482
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 catgctttgatttcacagttttgttcctcctacatgtgtgattattcttcaatttgcaaa 403
Query: 483 taaagaaaagtctgtctggttgcacatcggatgattct 520
||||||||||||||||||||||||||||||||||||||
Sbjct: 402 taaagaaaagtctgtctggttgcacatcggatgattct 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 921
Length adjustment: 10
Effective length of query: 510
Effective length of database: 911
Effective search space: 464610
Effective search space used: 464610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
