BAC Information

Click to search

BAC

Clone NameMSMg01-367P15
Chromosome5 (Build37)
Map Location 91,647,794 - 91,648,176
singlet/doubletsinglet
Overlap genenone
Upstream geneCox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg
Downstream geneBtc, 9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367P15.T7 (MSMg01no367_p15.b1)MSMg01-367P15.TJ (MSMg01no367_p15.g1)
ACCAG475315AG475316
length745725
length of high quality
(start - end)		382 (55 - 436)332 (50 - 381)
definitionCHROMAT_FILE: MSMg01no367_p15.b1 PHD_FILE: MSMg01no367_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:17 2005CHROMAT_FILE: MSMg01no367_p15.g1 PHD_FILE: MSMg01no367_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACTACCAGCTCATTAAGCACCGCTATCTATAACCATGCTA
CAGGCTAATACCATCCCGTTTTGTTGTTGCTACAGAGTGATACTATGCTG
CTTGAAATTGTTTTGATTTAGTTTCACTTAAATTTTTAGTGCATTGGCAG
TATACAGAAAATTGTTGTTCCTAATGTAATATGAATGGCTTCTAGCTCAA
TTTCCACTAGAGTCCTTGTTTCCCTCTGAAACACCATGGCTTGCCTTCAT
TATCTGCATTTGTATTAGTATTCTGGGTTTCTGCAGTCCCATCCGAATGG
ACTACTTATAGTCTGGATATTCTCTAGCCCTAGCTTCACATTTTCCTTGT
GGGCTGCTTTCTAGGACCTATAAGCCCCATGATAAGATTTAACGTCACCA
TTTGAGGTGCAATTTACTTTTCTCATTGCTGACATCTTGTCCTGGCAAAA
TATAAATGTCCGACTTGATGCTACGTCTCCACCTATTATTAGCTCTACAT
ACACTTCCTCTGCCCATTATAAATGATAACACCTGAAAAGAATGTCTGCT
ACACCCTATTTTGTGATTTACCCATGTATTGTTTTGTTTCTGTCTCACGC
TCGCATTTACTCCCCTTCTTTATGCGTTCTGCCTATTTTCTCGTNCGCAC
CCTCCCCTTCTTCTCATTTTTCCTATTCCCCTTTTATCTCCCCTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
TGATTAGGGAAAGGGGTCTTCAAACTGCATGTAACAAGTTCAGAGGCCAT
ATTAGTCGAGATTCTCCAGAGAAACAGACCAGTGGAATGGTTATGCCTCA
TGAAAGAAAATGTAGTATTGACTCACATATGACACATTGGGTAATCCAGC
AATGGCTGTTGCACAGTGATGTCGCTGAGAACCAGGTGTTCTCTGTCCAG
GAGGCTGGATGTCTTAGTCTCATTCTGGCAAGAAGGCCTTGGGGGTTCCT
GGAGCAGGTATCAGTTCACACTGTGAGACTGAGACTAGCTAGGTTCTTAT
GATAATAGCTACAGGATAAAACTAATCATCCTGCAAAGAGCAGCAGCATG
GTTTTTTCTTACGCCCTTTATGTTTGTGCCACAGCTGGAAGGTGCTGCCA
GTGGCAGGGTAGGCTTTCCAGTGATTCCTCCCTGCCCCTGCATGCCTTCC
CAGATTACCCTCAGTTTTTCTTAGTTGGTTCTAGATCCCATTGCATTGTC
AATTACCTTCTATCCCCATACACATCTACTACTTTTTTCCCTTTCTTCTT
ATTGCACATCCCCCGCCATGTTTTTTTAACCTGAATCTCTTTTGATATTT
TTCATTCCCTTGTTCTCTGAAATCTTATTCCCTCTCTCCTATGCCGTATC
CTTCCTTCTTTCCCTCTTTCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_p15.b1 MSMg01no367_p15.b1 CHROMAT_FILE:
MSMg01no367_p15.b1 PHD_FILE: MSMg01no367_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:17 2005
         (382 letters)



>mm_chr5_91647594_91648376
          Length = 783

 Score =  636 bits (329), Expect = 0.0
 Identities = 370/387 (95%), Gaps = 9/387 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctcactacca-gctcattaagcaccgctatctataaccatgctacaggctaatacca 59
           ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 attctcactacaaagctcattaagcaccgctgtctataaccatgctacaggctaatacca 260

                                                                       
Query: 60  tcccgttttgttgttg---ctacagagtgatactatgctgctt-gaaattgttttgattt 115
           ||||||||||||||||   |||||||    ||||||||||||| ||||||||||||||||
Sbjct: 261 tcccgttttgttgttgttgctacaga----tactatgctgctttgaaattgttttgattt 316

                                                                       
Query: 116 agtttcacttaaatttttagtgcattggcagtatacagaaaattgttgttcctaatgtaa 175
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agtttcacttaaattttcagtgcattggcagtatacagaaaattgttgttcctaatgtaa 376

                                                                       
Query: 176 tatgaatggcttctagctcaatttccactagagtccttgtttccctctgaaacaccatgg 235
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tatgaatggcctctagctcaatttccactagagtccttgtttccctctgaaacaccatgg 436

                                                                       
Query: 236 cttgccttcattatctgcatttgtattagtattctgggtttctgcagtcccatccgaatg 295
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 437 cttgccttcattatctgcatttgttttagtattctgggtttctgcagtcccatccgaatg 496

                                                                       
Query: 296 gactacttatagtctggatattctctagccctagcttcacattttccttgtgggctgctt 355
           |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||
Sbjct: 497 gactacttatagtctggatattctctagccttagcttcacattttccttgtgagctgttt 556

                                      
Query: 356 tctaggacctataagccccatgataag 382
           |||||||||||||||||||||||||||
Sbjct: 557 tctaggacctataagccccatgataag 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 783
Length adjustment: 9
Effective length of query: 373
Effective length of database: 774
Effective search space:   288702
Effective search space used:   288702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |