BAC Information

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BAC

Clone NameMSMg01-368A11
Chromosome5 (Build37)
Map Location 50,030,956 - 50,223,068
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnip4, LOC100041668, LOC100041659, EG433885
Downstream geneLOC666223, Gpr125, EG637307, LOC100041015, LOC242987
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368A11.T7 (MSMg01no368_a11.b1)MSMg01-368A11.TJ (MSMg01no368_a11.g1)
ACCAG475355AG475356
length736766
length of high quality
(start - end)		591 (37 - 627)507 (75 - 581)
definitionCHROMAT_FILE: MSMg01no368_a11.b1 PHD_FILE: MSMg01no368_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:21 2005CHROMAT_FILE: MSMg01no368_a11.g1 PHD_FILE: MSMg01no368_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,030,956 - 50,031,471)(50,222,597 - 50,223,068)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCAGG
GGACTGCCCAGATACATCGCCGTTAAGTCACACTGAATGAATACCTGAAT
CAACAGAACCTTGGATCCTCAAACTGGAATAGGCCTGATCCTTAGACGAG
GCCACTCATGGCTGAGGGTAGGAATGGCAGCTGCCCTCTCAGCAAGTGTG
AAGTGTGGGGATAGAGGCATCTGGCTTCCAACTCAGGAGCAGATTGGGTG
CTTTGACAAGCGCTTAAGTGAGCCCATGATGGTTCTATTTTGATAGGTGT
TAATCAAAGCTATTGTCACTGAGGCAGTCTCTTGCTACAATCTGTTCTTT
GATAGATGTGCAAAACACATCATGAGCGCCTTCTTTCTAGTACTAACATT
GCTGAGAATAGGAAGTAGGAAAAAGGTACTAGAATGACATGGCAAACATC
TTCAAAATCACACCTAGCTACTCTAAAATGAACGGTTATTAACTGCGATT
TTCATAGTAACCCGCAGGGCTCATATCCTTACACACAAGAGTCTCCTTTT
GTCCTTTGCCAAACTGTAGTCAAATGACTGCACGCCCATCATTTATATTG
CTATTGCCTGGAGCCCAGTATAAAGTAGATTCTTTNAAAGTGGCCGCTGA
ATGGAAGAAAGAAAAAAAAAAGATTGCCGAAGCTCCCACTCGACCATCCA
TCTCAACAGGGCAGTAACTCAGGACGATTTGAAAGG

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCCTCTGCTTCCCTTTTGCTAATG
TATTCTCTTATTTTCATCTAGAATTATTTAACAGAAACATGTTTATAACA
GTGAGCAAGAAGATTTTGGGTCAGGGAAATACATTTAACGCTTAGACTTA
TGTTGTATTTAATTCCATGTAGTTAATAGGTTAAAAATAAAAGTTTGGTT
CTAAGGTTTCTAGCTCTAGCTCTTGAAAAAGGTCAGCTTTTAATTTTAAA
TATAAAATTGTGAATTAAAAATAGAAGTGGTTAAAGAGGAACAATGTAGC
ACACCTTGATTATACAGAGTCTTTTTTGCATGAACACTATGGGAAGTATT
TCCAATAATGTTAGTCTAACTCTGATTTCTTCTTGGCACTCAACCCTTGC
CATTGTAGTCCTTTACCCTACTTCATTATTAGCCTTAGTTCTGACTGAAT
TTGCCTTGTTTTCTGTGTCCTGTCTCTTTCTTTAAGTAGTTAAGATTCAT
ATATGGAAAATGCTATGAGCAAAATAAGTGTGCCAAAGAAACAAATTCTT
GGTCAATAAAGCCTTTAAGTAGACTCAGTTCTCTCTGGTGGAATCACCAT
GTCTGACCCTAAGCTGTACTACAGAGCAATTGTGATAAAAATGGCATGGG
ACTGGTAGGACCGACAAGTAAACCATTGGATAAAAATGGGAGACCTAGAA
ACGAAACCCCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_a11.b1 MSMg01no368_a11.b1 CHROMAT_FILE:
MSMg01no368_a11.b1 PHD_FILE: MSMg01no368_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:21 2005
         (591 letters)



>mm_chr5_50030681_50031671
          Length = 991

 Score =  967 bits (500), Expect = 0.0
 Identities = 512/516 (99%)
 Strand = Plus / Plus

                                                                       
Query: 76  tggatcctcaaactggaataggcctgatccttagacgaggccactcatggctgagggtag 135
           ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 276 tggatcctcaaactggaataggcctgatccttagatgaggacactcatggctgagggtag 335

                                                                       
Query: 136 gaatggcagctgccctctcagcaagtgtgaagtgtggggatagaggcatctggcttccaa 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gaatggcagctgccctctcagcaagtgtgaagtgtggggatagaggcatctggcttccaa 395

                                                                       
Query: 196 ctcaggagcagattgggtgctttgacaagcgcttaagtgagcccatgatggttctatttt 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctcaggagcagattgggtgctttgacaagcgcttaagtgagcccatgatggttctatttt 455

                                                                       
Query: 256 gataggtgttaatcaaagctattgtcactgaggcagtctcttgctacaatctgttctttg 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gataggtgttaatcaaagctattgtcactgaggcagtctcttgctacaatctgttctttg 515

                                                                       
Query: 316 atagatgtgcaaaacacatcatgagcgccttctttctagtactaacattgctgagaatag 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 atagatgtgcaaaacacatcatgagcgccttctttctagtactaacattgctgagaatag 575

                                                                       
Query: 376 gaagtaggaaaaaggtactagaatgacatggcaaacatcttcaaaatcacacctagctac 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gaagtaggaaaaaggtactagaatgacatggcaaacatcttcaaaatcacacctagctac 635

                                                                       
Query: 436 tctaaaatgaacggttattaactgcgattttcatagtaacccgcagggctcatatcctta 495
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 636 tctaaaatgaacggttattaactgcgattttcatagtaaccctcagggctcatatcctta 695

                                                                       
Query: 496 cacacaagagtctccttttgtcctttgccaaactgtagtcaaatgactgcacgcccatca 555
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 cacaaaagagtctccttttgtcctttgccaaactgtagtcaaatgactgcacgcccatca 755

                                               
Query: 556 tttatattgctattgcctggagcccagtataaagta 591
           ||||||||||||||||||||||||||||||||||||
Sbjct: 756 tttatattgctattgcctggagcccagtataaagta 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no368_a11.g1 MSMg01no368_a11.g1 CHROMAT_FILE:
MSMg01no368_a11.g1 PHD_FILE: MSMg01no368_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:21 2005
         (507 letters)



>mm_chr5_50222162_50223068
          Length = 907

 Score =  882 bits (456), Expect = 0.0
 Identities = 468/472 (99%)
 Strand = Plus / Minus

                                                                       
Query: 36  attttcatctagaattatttaacagaaacatgtttataacagtgagcaagaagattttgg 95
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 attttcatctagaattatttaacagaaacatgtttataacagtgagcaagaagattttgg 848

                                                                       
Query: 96  gtcagggaaatacatttaacgcttagacttatgttgtatttaattccatgtagttaatag 155
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 gtcagggaaatacatttaacgcttagacttatgttgtatttaattccatgtagttaatag 788

                                                                       
Query: 156 gttaaaaataaaagtttggttctaaggtttctagctctagctcttgaaaaaggtcagctt 215
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 787 gttaaaaataaaagtttggttctgaggtttctagctctagctcttgaaaaaggtcagctt 728

                                                                       
Query: 216 ttaattttaaatataaaattgtgaattaaaaatagaagtggttaaagaggaacaatgtag 275
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 727 ttaattttaaatataaaattgtgaattaaaaatagaagtggtcaaagaggaacaatgtag 668

                                                                       
Query: 276 cacaccttgattatacagagtcttttttgcatgaacactatgggaagtatttccaataat 335
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 cacaccttcattatacagagtcttttttgcatgaacactatgggaagtatttccaataat 608

                                                                       
Query: 336 gttagtctaactctgatttcttcttggcactcaacccttgccattgtagtcctttaccct 395
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gttagtctaactctgatctcttcttggcactcaacccttgccattgtagtcctttaccct 548

                                                                       
Query: 396 acttcattattagccttagttctgactgaatttgccttgttttctgtgtcctgtctcttt 455
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 acttcattattagccttagttctgactgaatttgccttgttttctgtgtcctgtctcttt 488

                                                               
Query: 456 ctttaagtagttaagattcatatatggaaaatgctatgagcaaaataagtgt 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctttaagtagttaagattcatatatggaaaatgctatgagcaaaataagtgt 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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