BAC Information

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BAC

Clone NameMSMg01-368A16
Chromosome5 (Build37)
Map Location 14,950,817 - 14,951,397
singlet/doubletsinglet
Overlap geneSpeer8-ps1
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368A16.T7 (MSMg01no368_a16.b1)MSMg01-368A16.TJ (MSMg01no368_a16.g1)
ACCAG475365AG475366
length744740
length of high quality
(start - end)		583 (46 - 628)482 (69 - 550)
definitionCHROMAT_FILE: MSMg01no368_a16.b1 PHD_FILE: MSMg01no368_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:22 2005CHROMAT_FILE: MSMg01no368_a16.g1 PHD_FILE: MSMg01no368_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:22 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCTGCTCCTCACAAGCCGTCACTAACAGAATGTGGGTGGTGAG
AATTAGTGCTTATTTGTTGATGAAGAAGTAAGAACATACATACATCAGGG
ACCACATTTTGAATGTGTTTTGTGGTACAGCCTAGGTTTTGGGTGTTTAT
GAACAGTATACTTGAGGAAACCTTGGAATTTTCAGCTTTATATGCTCTAC
ATTAAAATATAACTTTTACGTTTGAAACATTTACATGATGAATAAACCCC
AATGATTGCTTACTGCTTTATAACACTGTTGTTAGTGTTAACCCACGTGA
CTGTCAGGATGTACACAGAGATGGTCGTAACTTAGCAACTTATCTTCAGC
TATTTTATAGACTGTTAAGACAACAGCCATGATAGTATTATATTAGGACT
GTCATGCTTTTAAATGTTAAAAAATGCTTGTATGTATAAAATATAAAATT
GCAAAAGAGCAGTAACTCATTGAGATTGTTATATATTANACTTTATTCAT
TTAAAAAGCAAACTTTAATTTTGTTAAGGAATTTANNACACAAGAACCCA
ATAAAAAGAAATAATATACTACCTTTTTATACAAAACTTGTAATTTAAAG
CATGTTATTTTGTAAATTTTACTAAGCTCAGATCAATATTTTAAGAAATA
TTAGTTTATCCTAGAAGGNAAAGCCCTATCACTGGAAGACAACC

TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGCACTAAACCCATCTAGTCCTGGGCTTTGTT
TGGTTGGGAGACTTTTAATGACTGCTTCTATTTCTTTGGCAGTTATGGGA
GTGTTAGACTGTTTATCTGATCCTGGTTTCATTTTGGTATCTAGTGTCTG
TCTAGAAAATTGTCCATTTCATCCAATTTTTTCAGTATTGTTGAGTATAG
TCTTTTGTAATAGGAAATTATGATTTTTGATTATTCTGTTTATTCTGTTG
TTATTTCTTTCTTTTCAATTCTGATTTTGTTAATTTGGATACTGTCTCTT
TGCCCTCTGGTTAGTCTGGCTAAGGGTTTATCTATTTTGTTGCTTTCTCA
AAGAACCAGATCACGGTTTTATTGATTCTTTGTATAATTCTTTTGTTTCT
ACTTGGTTGATTTCAGCTCTGTATTTGATTATTTCCTGACATCTACTCTT
CTTGGGTGTATGTTGGCAACAAAATAAAAGAAGGGGTGGGGGGTCTTGGA
CTGGGGCCTGGGGAGAAGTAGGCTAAGAAATAAATGCCCACACCCCGCCA
GAGTTTCCCTTATCTCTGGTCAGTCAGGCATGGGGAGGGTTGCTATCTAC
CCTATTCACTTCTTCCTGGGGTGGGGATTCCTCTATCCCACTCTTTATGG
GGTGGTCAAGGGGATACCCTGTTTCGGAATCCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_a16.b1 MSMg01no368_a16.b1 CHROMAT_FILE:
MSMg01no368_a16.b1 PHD_FILE: MSMg01no368_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:22 2005
         (583 letters)



>mm_chr5_14950611_14951597
          Length = 987

 Score =  944 bits (488), Expect = 0.0
 Identities = 557/582 (95%), Gaps = 6/582 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   attctttctgctcctcacaagccgtcactaacagaatgtgggtggtgagaattagtgctt 66
           ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 787 attctttctgctcatcacaagccgtcactaacagaatgtgggtggtgagaactagtgctt 728

                                                                       
Query: 67  atttgttgatgaagaagtaagaacatacatacatcagggaccacattttgaatgtgtttt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 atttgttgatgaagaagtaagaacatacatacatcagggaccacattttgaatgtgtttt 668

                                                                       
Query: 127 gtggtacagcctaggttttgggtgtttatgaacagtatacttgaggaaaccttggaattt 186
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 667 gtggtacagcctaggttttgggtgtttatgaacagtatactcgaggaaaccttggaattg 608

                                                                       
Query: 187 tcagctttatatgctctacattaaaatataacttttacgtttgaaacatttacatga--- 243
            ||||||||| |||||||||||||||||| |||||||| ||||  ||||||||||||   
Sbjct: 607 acagctttatgtgctctacattaaaatattacttttacatttgctacatttacatgacga 548

                                                                       
Query: 244 tgaataaaccccaatgattgcttactgctttataacactgttgttagtgttaacccacgt 303
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 547 tgaataaaccccaatgattgcttactgcgttataacactgttgttagtgttaactcacgt 488

                                                                       
Query: 304 gactgtcaggatgtacacagagatggtcgtaacttagcaacttatcttcagctatttt-a 362
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 487 gactgtcagaatgtacacagagatggtcgtaacttagcaacttatcttcagctattttta 428

                                                                       
Query: 363 tagactgttaagacaacagccatgatagtattatattaggactgtcatgcttttaaatgt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tagactgttaagacaacagccatgatagtattatattaggactgtcatgcttttaaatgt 368

                                                                       
Query: 423 taaaaaatgcttgtatgtataaaatataaaattgcaaaagagcagtaactcattgagatt 482
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 367 taaaaaatgcttgtatgtataaaatataaaattgcaaaagagcagtagctcattgagatt 308

                                                                       
Query: 483 gttatatattanactttattcatttaaaaagcaaactttaattttgttaaggaatttann 542
           |||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||  
Sbjct: 307 gttatagattaaactttattcatttaaaaagtaaactttaattttgttaaggaatttaa- 249

                                                     
Query: 543 ac-acaagaacccaataaaaagaaataatatactaccttttt 583
           || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 248 actacaagaacccaataaaaagaaataatatactatcttttt 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 987
Length adjustment: 10
Effective length of query: 573
Effective length of database: 977
Effective search space:   559821
Effective search space used:   559821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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