BAC Information

Click to search

BAC

Clone NameMSMg01-368C07
Chromosome5 (Build37)
Map Location 135,038,039 - 135,038,637
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52
Downstream geneRfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368C07.T7 (MSMg01no368_c07.b1)MSMg01-368C07.TJ (MSMg01no368_c07.g1)
ACCAG475442AG475443
length746760
length of high quality
(start - end)		606 (38 - 643)531 (73 - 603)
definitionCHROMAT_FILE: MSMg01no368_c07.b1 PHD_FILE: MSMg01no368_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:30 2005CHROMAT_FILE: MSMg01no368_c07.g1 PHD_FILE: MSMg01no368_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
GACATTCCTCCCTGGGTTAGATTGTCCAGGTTAACTGAGTAGACATTTGG
GTGTGAGGGGCTGCCCAGGTAAGTATATAAAGGTCTTGACAAGAAGGACC
AAGATGGCAGCACAAAGATGCTAAGAGCCTTTGCTCCTCTTGCAGAGGAC
TCCGGTTCTGTTTTCAGCACCCATTTGGTGGCTGACAACCATATGTATGT
AACTGTAGTTCCAGGGAATTGAGTCTATGCCAACTTCTGACCTCCTCGGG
TACCAGGTATACAGGTAGTACACACACATACATGCAGACAAGACATTCAC
ACACATAAGATAAAATAAATATTTTTAAAATAATGATGATAATATTAGCC
AAGAAGAACAGTAGATAAAGTGTCTTTGAGATTGAGGACTGAGGAGGCTG
GAGAGATGGCTCAGTGGTTAAGAGTGCTGACTGCTCTTCCAGAGGTCCTG
AGTTCAATTCCCAACAACCCCATGGTAGCTCACAACCATCTGTAATGGGG
ATCCGATGCCCTCTTCTGGTGCATCTGAAGAGAGCTATAATGTACTCATA
CACATAAATAAATAAATCTTAAAAATAAATAAAAAGAGATTAANGGGGCT
GGTGAGATGGCTCAATTGGTTAGAGCCCCCGACTGCTCTTCCGAAAGTCC
AGAATTCAAATCCAGCAACCACATGGTGGGTCACAACCTCCGGTAA

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTCCTATCTTTGGTTTTTCTAAGGTTT
TGTTCCTTATTTATTATTGTTTATTTGTGGTGCTGGGGACTGAACCTATG
GCCTTGGGGTATACTAGGCAAGTCTTCTACCTCTGAGCTGTGTGCCCAAC
CTCTAAGGTAGAGATTTTTCTTTTTCTTTCTATTTGTATTTTGTTTGTGT
GTTTGTTTTGCCTTGTTGAGATGGAGTTTCATATAGCCCTAGTTGGTCTC
GAACTCACTATGTGGCTGAGAGAGACCTTGAACTCCTGATCCTTCCGCTT
CCTGAATGCTGGGATTACAGCTGTGAGCCACTGATCCTGACTCTAATTTC
CTAAGGTTAAAACACACTTNTTGTTTTGGGGTCTCAAATATATAGCTCTG
GCTGTCCTAGAACATGGTATGTAGGACATATTAGCCTCTCGAAGACTTGC
AGCAATCCTTCTGCCTCTGCCTTCCAAGTGCTGGGATTATCAGTGCTCAT
AACCATTTCTGACCTCCCCAGCCCAGTTTCTAAGGCTTGATTCCCTCTGT
CAGACGTGGATGGTACATATACAGGTGACAGGAGAGGAGAGGTCCCAGGG
AAGGTACTCCAAGGAATCTGAAGATATCTTGAGGTCCCTCTTTGAAAAAA
GTTCAGTTCATCTGGAATTGGGGAAACATGCCTGGAATTTACAGGAAAAA
TCTATCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_c07.b1 MSMg01no368_c07.b1 CHROMAT_FILE:
MSMg01no368_c07.b1 PHD_FILE: MSMg01no368_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:30 2005
         (606 letters)



>mm_chr5_135037832_135038837
          Length = 1006

 Score = 1006 bits (520), Expect = 0.0
 Identities = 580/600 (96%), Gaps = 2/600 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttccaggacattcc-tccctgggttagattgtccaggttaactgagtagacatttgggtg 66
           ||||||||||  || ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 208 ttccaggaca-accatccctgggttagactgtccaggttaactgagtagacatttgggtg 266

                                                                       
Query: 67  tgaggggctgcccaggtaagtatataaaggtcttgacaagaaggaccaagatggcagcac 126
           ||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct: 267 tgaggggctgcccaggtaagtgtacaaaagtcttgacaagaaggaccaagatggcagcac 326

                                                                       
Query: 127 aaagatgctaagagcctttgctcctcttgcagaggactccggttctgttttcagcaccca 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaagatgctaagagcctttgctcctcttgcagaggactccggttctgttttcagcaccca 386

                                                                       
Query: 187 tttggtggctgacaaccatatgtatgtaactgtagttccagggaattgagtctatgccaa 246
           ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 387 tttggtggctgacaaccatctgtatgtaactctagttccagggaattgattctatgccaa 446

                                                                       
Query: 247 cttctgacctcctcgggtaccaggtatacaggtagtacacacacatacatgcagacaaga 306
           ||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||||||||
Sbjct: 447 cttctgacctccttgggtaccaggtatacaagtagtatacacacataaatgcagacaaga 506

                                                                       
Query: 307 cattcacacacataagataaaataaatatttttaaaataatgatgataatattagccaag 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cattcacacacataagataaaataaatatttttaaaataatgatgataatattagccaag 566

                                                                       
Query: 367 aagaacagtagataaagtgtctttgagattgaggactgaggaggctggagagatggctca 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aagaacagtagataaagtgtctttgagattgaggactgaggaggctggagagatggctca 626

                                                                       
Query: 427 gtggttaagagtgctgactgctcttccagaggtcctgagttcaattcccaacaaccccat 486
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 627 gtggttaagagtgctgactgctcttccagaggtcctgagttcaattcccaacaaccacat 686

                                                                       
Query: 487 ggtagctcacaaccatctgtaatggggatccgatgccctcttctggtgcatctgaagaga 546
           ||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 687 ggtggctcacaaccatctgtaatggggatctgatgccctcttctggtgcgtctgaagaga 746

                                                                       
Query: 547 gctataatgtactcatacacataaataaataaatcttaaaaataaataaaaagagattaa 606
           |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gctatagtgtactcatacacacaaataaataaatcttaaaaataaataaaaagagattaa 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |