Query= MSMg01no368_f03.b1 MSMg01no368_f03.b1 CHROMAT_FILE:
MSMg01no368_f03.b1 PHD_FILE: MSMg01no368_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:43 2005
(633 letters)
>mm_chr5_151443471_151444503
Length = 1033
Score = 1122 bits (580), Expect = 0.0
Identities = 614/630 (97%), Gaps = 9/630 (1%)
Strand = Plus / Plus
Query: 5 gaattcaggatagtcagggctacacagagaaaacagaccataccaaaacaaaaacaaaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggatagtcagggctacacagagaaaacagaccataccaaaacaaaaacaaaca 264
Query: 65 aacaaaaaaaccccaacaacactagattaatagcactatgactctgaaatgaagcttcta 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacaaaaaaaccccaaaaacactagattaatagcactatgactctgaaatgaagcttcta 324
Query: 125 acatgtgtgcaagtacaagtctatgtgtacaggtgcataaaaggctagaggtattggatt 184
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 acatgtgtgcaagtacaagtctatgtgtacaggtgcataaaaggctagagatattggatt 384
Query: 185 ccacaatacctggagttacaaggggtcatgtgccacctcatatgggtgctgggaatcaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccacaatacctggagttacaaggggtcatgtgccacctcatatgggtgctgggaatcaaa 444
Query: 245 cttgggtcctctggaagagcacttactcttaaccaccgagccatgtctcaattctgaata 304
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ct--------ctggaagagcacttactcttaaccaccgagccatgtctcaattctgaata 496
Query: 305 aagtttcttaaagacacagcatatcctaacagtcaagcttaaatttttagcatgattttc 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 497 aagtttcttaaagacacagcatatcttaacagtcaagcttaaatttttagcatgattttc 556
Query: 365 aaactgtgcaaatctaaataatatactggaaaacataaatctaaattaaaagcaacctta 424
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 557 aaactgtgcaaatctaaataatatactggaaaacacaaatctaaattaaaagcaatctta 616
Query: 425 tgttaaagagatatgtataatgtaatacacatacatacctacaactacacacagatatgt 484
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 617 tgttaaagagatatgtataatgtaatacacatacatacctacaacgacacacagatatgt 676
Query: 485 tagcatatttttactatgtgtttagctaagatgataaaatacgtacaaacacacatgtgc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tagcatatttttactatgtgtttagctaagatgataaaatacgtacaaacacacatgtgc 736
Query: 545 taaacaagataagatgacacgagttgggatctactcacagaggaacagcacagagcattt 604
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 737 taaacaagataagatgacacgagttgggatctactcacagaggaacagcacaaagcattt 796
Query: 605 aggtaaatagcagtcagagtctc-ctaaca 633
||||||||||||||||||||||| ||||||
Sbjct: 797 aggtaaatagcagtcagagtctcactaaca 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_f03.g1 MSMg01no368_f03.g1 CHROMAT_FILE:
MSMg01no368_f03.g1 PHD_FILE: MSMg01no368_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:44 2005
(270 letters)
>mm_chr5_151632370_151633039
Length = 670
Score = 445 bits (230), Expect = e-129
Identities = 265/288 (92%), Gaps = 18/288 (6%)
Strand = Plus / Minus
Query: 1 agattccatttgccccagcttattctcacagattgaaggtactcgtgatggataaagctc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 363 agattccatttgccccagcttattctcacagattgaaggtactcgtgatggataaagcac 304
Query: 61 tgaccatgttagatacattctcatatacacatatactgtaaagtaagctgagaacagcca 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 303 tgaccatgttagatacattctcatatacacatatactgtaaagtgagctgagaacagcca 244
Query: 121 agtaaaacagcaagtaattaacacagccagtggctagttcctgagtgtgtatgtatgtgt 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 243 agtaaaacagcaagtaattaacacagccagtggctagttcctgtgtgtgtatgtatgtgt 184
Query: 181 gttcgtgtgtgtgtgt------------------ctgtgtgtgtgtctgtgtgtctgtct 222
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 183 gttcgtgtgtgtgtgtgtgtgtctgtatgtgtgtctgtgtgtgtgtctgtgtgtctgtct 124
Query: 223 gtgtgggtgacagagagagagggagggaaggagagggagagagggggt 270
|| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 123 gtctgggtgacagagagagagggagggagggagagggagagagggggt 76
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
