CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCCAACTTTACGTGAAATAGAATTAGATGACTATCAGATGTAGTC
GAGGTTCCCTTAGGCATTCTTCCAAACCAAGTTTTGAAGATCAGGTTCCT
ACATAGGGAGAAGCGGTGCCTTCTGAAACTTGGAAGTTTGAGATCAAAGA
GTCAGCAGAGTTGTGACTGAATATTAATTTCATAGTCTACAAGAGCTTAT
TTCTTAATGGTGTCTATTTATAGGCACAGATGTGAATGACAAGGTTGACC
ACATGCTAATTGTAATCACTATTTTCTCAGGTTATTTCATTTCTGTTTTA
GTGGATGTAGCAGCATTATTTGATCGAGGAAGAGCTCTAGAATTACAGTT
CTGTCTGTCTCTAGTACATAAATGAGAGGTGCACGTGGAGTTTCCAAACA
ATATTAGCTTCCCCCACAGCAGTGTACAGAGATGGTTGACAAAAGTTTCT
ATAGAGAACATAGTTTGAATCTTTTGTCAATATATAGAGTTCGTCTGTGT
TTGGAGATCCTCTTGTCTGTAAATGATAAACCATGCTGTATTACAAGCAC
ACTTGCATGCAACTCCAGTATTTTACTTATACCCAGCTATTACAGGAAGT
TCATAACTGGTGTTTAGGTAATGACTATCATAAACAGCAACAATTTCCTG
CTTTGAGTGCCTATGTGTTCTTTTATCAATAGNAGG

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGGCCTGAGGAATACCCAATGGCTGAGAAACA
CCTGAAAAAATGTTCAACATCCTTAATCATCATGGAAATGCAAATCAAAA
CAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGTCTAGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCT
GGTGGTTCCTCAGAAAATTGTACATAGTACTACCGGAGGATTCCGCAATA
CTTCTCCTGGGTATATATCCAGAAGATGTTTCAACTGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCTAGAAGCTGGA
AAGAACTCAGATGTCCCTCAGCAGAGGAATAGATACAGAAAATGTGGTAC
ATTTACACAATGGATTACTACTCAGCTATTAAAAAGAATGAATTCACAAA
ATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTAGTGAGGTAAC
CCAATCACAAAAGAACTCACACAATATGTACTAACAGATAAGTGGATATT
AGTCCAGAAACTTAGAATACCCAAGATATAAGATACAATTTGCAAAACAC
AGGAAACTTCCGAAGAACAAAGACCAAGTATG

Query= MSMg01no368_l14.b1 MSMg01no368_l14.b1 CHROMAT_FILE:
MSMg01no368_l14.b1 PHD_FILE: MSMg01no368_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:15 2005
         (637 letters)



>mm_chr5_49253082_49254119
          Length = 1038

 Score = 1180 bits (610), Expect = 0.0
 Identities = 628/634 (99%), Gaps = 1/634 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcc-caactttacgtgaaatagaattagatgactatcagatgtagtcgaggttccc 63
           ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 gaattccacaactttaggtgaaatagaattagatgactatcagatgtagtcgaggttccc 779

                                                                       
Query: 64  ttaggcattcttccaaaccaagttttgaagatcaggttcctacatagggagaagcggtgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ttaggcattcttccaaaccaagttttgaagatcaggttcctacatagggagaagcggtgc 719

                                                                       
Query: 124 cttctgaaacttggaagtttgagatcaaagagtcagcagagttgtgactgaatattaatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 cttctgaaacttggaagtttgagatcaaagagtcagcagagttgtgactgaatattaatt 659

                                                                       
Query: 184 tcatagtctacaagagcttatttcttaatggtgtctatttataggcacagatgtgaatga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tcatagtctacaagagcttatttcttaatggtgtctatttataggcacagatgtgaatga 599

                                                                       
Query: 244 caaggttgaccacatgctaattgtaatcactattttctcaggttatttcatttctgtttt 303
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 598 caaggttgaccacatgctaattgtaatcactattctctcaggttatttcatttctgtttt 539

                                                                       
Query: 304 agtggatgtagcagcattatttgatcgaggaagagctctagaattacagttctgtctgtc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 agtggatgtagcagcattatttgatcgaggaagagctctagaattacagttctgtctgtc 479

                                                                       
Query: 364 tctagtacataaatgagaggtgcacgtggagtttccaaacaatattagcttcccccacag 423
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 478 tctagtacataaatgagaggtgcacatggagtttccaaacaatattagcttccaccacag 419

                                                                       
Query: 424 cagtgtacagagatggttgacaaaagtttctatagagaacatagtttgaatcttttgtca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cagtgtacagagatggttgacaaaagtttctatagagaacatagtttgaatcttttgtca 359

                                                                       
Query: 484 atatatagagttcgtctgtgtttggagatcctcttgtctgtaaatgataaaccatgctgt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atatatagagttcgtctgtgtttggagatcctcttgtctgtaaatgataaaccatgctgt 299

                                                                       
Query: 544 attacaagcacacttgcatgcaactccagtattttacttatacccagctattacaggaag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 attacaagcacacttgcatgcaactccagtattttacttatacccagctattacaggaag 239

                                             
Query: 604 ttcataactggtgtttaggtaatgactatcataa 637
           |||||||||||| |||||||||||||||||||||
Sbjct: 238 ttcataactggtatttaggtaatgactatcataa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1038
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1028
Effective search space:   644556
Effective search space used:   644556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)