BAC Information

Click to search

BAC

Clone NameMSMg01-369B23
Chromosome5 (Build37)
Map Location 43,594,833 - 43,595,144
singlet/doubletsinglet
Overlap genenone
Upstream geneEG636612, LOC433883, EG665934
Downstream geneCpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369B23.T7 (MSMg01no369_b23.b1)MSMg01-369B23.TJ (MSMg01no369_b23.g1)
ACCAG476186AG476187
length773844
length of high quality
(start - end)
314 (45 - 358)---
definitionCHROMAT_FILE: MSMg01no369_b23.b1 PHD_FILE: MSMg01no369_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:45 2005CHROMAT_FILE: MSMg01no369_b23.g1 PHD_FILE: MSMg01no369_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATATTCAGAGGATCCGCGGAATTCCAGGACAGTTCCGACAACTAA
GGCTACACAAAGAAACCCAGTCTTGGGAAAAAAAAAGTTTGGGGAATGAA
AATCAAATGTGTGAAACTATCAATAAAAATGTTTTTAAATTGTTATGGGA
AAGCAGTTTCTAAAATTTATAGACTTAAGACTAATAAGTGTACACACACA
CACATACACACACACACTTTGGGATGATTTGGATTATGTTGGCCTGGTTC
AAAAGGTTTCAGAGGGGAATATTACCAAGTAGCTCACAGACATTCTTGTG
ATATTTTGGCAACGAACATGAATGCCTTTTGCTCCTGTCCTACAAATCTC
CCTGAATCTAAGGTGAAGAGTCTTGGATTTAATGTTATTGGCACAGGACA
TTTCAAGACAGCCTAAGGCGGTAACTTTTTAAGGTGGCGGCTATACCGAT
CCGCCCTATGCACATCTACCATGACCAGGAGCAACTACCTCCAGAAGAAA
TATGACATGCCCCCTCCCCCACACCGCGAGCACCACCCAATTGCCCTCGT
TGCATCCCACCCCCTTTTTCTTATCATCTACCTCCTATCTCCCACCCCCT
CTCTTGTGCTTCTCCGCACCCCCTCCCCCCCCCCCCTTCCTTCCCTCCTT
TCTCCCCCCCCTTTTTCCCCTCCCACCTTCCTTTTTCCCCCCCTATTCCT
CTCCTCCCCCCCTTCCTTCCCTTCCCTTTCCCGCCCCCTCTTCCTCCCCC
TCTCTCCCCTCTCCTCTCCCTCG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGGCCAGCCTGGGCTTTGTGGGACCCTGTCT
GAAGGAGTATTAGGAGGAAGAGAAGGGGGAGGGGTGAGGTTGAGTCCCTT
TTCCCCCCTTTTTTCTCCTCTTCCCCCCTCTTTCTTTCCCCTTCTTCTTC
TTCTCCTGTTCTCCCTTTCCCCCTCCTTTCCCCCCCCCCTCCCTTTCCTT
TCTCTTTCTTCTTTTTCCCCCCCCTTCCCTCTTTCTTCTCTCTCTCTCCC
CCCCTCCCTTCCTTCCTTTTTTTTTTCCCTCTCTCTTCCTTCCCTTCCTT
TCCTTCCTCCTTTTTTCCCCCTTCCCTTTTTCCCCTTTTCTTCCTCTCTC
CCTCCCTCCCTTTTCTCCCCTCCCTTTCCTTTTCCCCCCCCTTCTCTTCC
TTCTTCTTCCCCTTTTCCTTTCTCTTCTTTTTCTCTCCCCCTTCTCCCCT
TTCCTTTTTTTCCTCCCCCCTTCTCTCCCCCCCCCTTCTTTTCTTTTTCT
TTCTTCTCTTCCTCTTTTCCCTTTTCCCCTCTCCTCTTCTCTTTCTTTTT
CTCTCTTTTCCTTTTTCTTTCTCTCCTTCCCTTCTCTTTCCCCCTTTTTC
TCTCCCCCCCCTTCTCTCCTCTCTTTTTTCCCCCCCCTCCCCTCCTTCTT
TCTTTCCTCTCTTCTTCTCCTCCTCCTCTTTTTTTTTTTCCCTTTTTTTT
CTTCTTTTTCTCCCCCCCGCCTCTCTCCTCTCCCTCCTTCTTTTTTCCCT
TCCTCTTTTTTCTTCTTTCCTTTCTCCTCTCCCCTCTCTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_b23.b1 MSMg01no369_b23.b1 CHROMAT_FILE:
MSMg01no369_b23.b1 PHD_FILE: MSMg01no369_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:45 2005
         (314 letters)



>mm_chr5_43594798_43595511
          Length = 714

 Score =  534 bits (276), Expect = e-156
 Identities = 304/314 (96%), Gaps = 2/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactaaggctacacaaagaaacccagtcttgggaaaaaaaaagtttggggaatgaaaatc 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 347 aactaaggctacacaaagaaacccagtcttggaaaaaaaaaagtttggggaatgaaaatt 288

                                                                       
Query: 61  aaatgtgtgaaactatcaataaaaatgtttttaaattgttatgggaaagcagtttctaaa 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 287 aaatgtgtgaaactatcaataaaaatgttttaaaattgttatgggaaagcagtttctaaa 228

                                                                       
Query: 121 atttatagacttaagactaataagtgtacacacacacacatacacacacacactttggga 180
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 227 atttatagacttaagactaataagtgtacacacacacacat--acacacacactttggga 170

                                                                       
Query: 181 tgatttggattatgttggcctggttcaaaaggtttcagaggggaatattaccaagtagct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 169 tgatttggattatgttggcctggttcaaaaggtttcagaggggaatattagcaagtagct 110

                                                                       
Query: 241 cacagacattcttgtgatattttggcaacgaacatgaatgccttttgctcctgtcctaca 300
           || ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
Sbjct: 109 cagagacattcttgtgatattttggcaatgaacatgaatgccttttgctcctgccctaaa 50

                         
Query: 301 aatctccctgaatc 314
           ||||||||||||||
Sbjct: 49  aatctccctgaatc 36


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)