Query= MSMg01no369_h21.b1 MSMg01no369_h21.b1 CHROMAT_FILE:
MSMg01no369_h21.b1 PHD_FILE: MSMg01no369_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:13 2005
(258 letters)
>mm_chr5_39042943_39043600
Length = 658
Score = 491 bits (254), Expect = e-143
Identities = 257/258 (99%)
Strand = Plus / Plus
Query: 1 caatttaaacacacacaacaatgaaaactgactaagagaattgacaggtgggactcaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatttaaacacacacaacaatgaaaactgactaagagaattgacaggtgggactcaaat 260
Query: 61 ctaacaatggcgacacaactgaaaaatacaagctcaagaaattaggaaatgtaaatacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaacaatggcgacacaactgaaaaatacaagctcaagaaattaggaaatgtaaatacag 320
Query: 121 actaaaagaggaattaggttgtgtcacaggcactgggacaagctgccttatcttgacctt 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 actaaaagaggaattaggttgtgtcacaggcactgggacaagctgcctcatcttgacctt 380
Query: 181 cagtattgctgataggataccagagagcagaggtgggaggtagtattggaagaagtcata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtattgctgataggataccagagagcagaggtgggaggtagtattggaagaagtcata 440
Query: 241 cactgttttcttcgtgag 258
||||||||||||||||||
Sbjct: 441 cactgttttcttcgtgag 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space: 161601
Effective search space used: 161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no369_h21.g1 MSMg01no369_h21.g1 CHROMAT_FILE:
MSMg01no369_h21.g1 PHD_FILE: MSMg01no369_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:14 2005
(412 letters)
>mm_chr5_39259314_39260125
Length = 812
Score = 710 bits (367), Expect = 0.0
Identities = 370/371 (99%), Gaps = 1/371 (0%)
Strand = Plus / Minus
Query: 1 tcttcaattcctcaaaaccatctgtaatagtaacccatttgacttttaatacctcctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tcttcaattcctcaaaaccatctgtaatagtaacccatttgacttttaatacctcctctc 456
Query: 61 actggaaatctaatcaagtgaactgttataattaattgaatttagctgattaccctagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 actggaaatctaatcaagtgaactgttataattaattgaatttagctgattaccctagcc 396
Query: 121 agggttagaattagaaattcaatcagcaagcaagtattctcctctaaatatgagcatctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 agggttagaattagaaattcaatcagcaagcaagtattctcctctaaatatgagcatctc 336
Query: 181 tacatcatgacttcctaatttttgacatgaaaataggagaaaattatgcaaaattctgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tacatcatgacttcctaatttttgacatgaaaataggagaaaattatgcaaaattctgaa 276
Query: 241 tcgtgggcaaattagtaactgtctgcatctaagaaatactagtttcaatatgcttactca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tcgtgggcaaattagtaactgtctgcatctaagaaatactagtttcaatatgcttactca 216
Query: 301 aagttgcgtgcatagctctctctctctcttctctctctctctctctctctctctctctct 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 215 aagttgcgtgcatagctctctctctctc-tctctctctctctctctctctctctctctct 157
Query: 361 ctctctctctc 371
|||||||||||
Sbjct: 156 ctctctctctc 146
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 105
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space: 323609
Effective search space used: 323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
