BAC Information

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BAC

Clone NameMSMg01-369K12
Chromosome5 (Build37)
Map Location 78,913,330 - 78,913,714
singlet/doubletsinglet
Overlap genenone
Upstream genePea15b, LOC669227, LOC100039398, Mthfr-ps1
Downstream geneEG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369K12.T7 (MSMg01no369_k12.b1)MSMg01-369K12.TJ (MSMg01no369_k12.g1)
ACCAG476589AG476590
length770765
length of high quality
(start - end)
270 (38 - 307)446 (77 - 522)
definitionCHROMAT_FILE: MSMg01no369_k12.b1 PHD_FILE: MSMg01no369_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:26 2005CHROMAT_FILE: MSMg01no369_k12.g1 PHD_FILE: MSMg01no369_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:26 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTG
ATCTTCTCAAAACTTTTATCATGAATGGGTGTTGGATCTGGTCAAATGCT
TTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTT
TATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGTA
TCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGT
TCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATATT
CATAAGATATTTTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTCTGTG
GTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTA
CCTTCTACTTCTACTTTGTGAAATAGTTTGTGCAGAACTGGAATTATATC
TTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTCCTGGGC
TTTTTTTGGTTGTGAGAATATTATTAACTGTTTCTATTTCTTTAGCCGAT
ATGCGACTGTTTACACGATTTATTTGGATCCAGTATTTCTTTTTTTAACT
TGTTTATTTGTTCAGATTTTTTTTTTTTTTCTATTCTATTCTTTCTTTCT
TTCTGTCTATTTTTTTCCCCTTTTCTTCTATTTTTTCTTTTTTTTTTTCC
TCTGCTATATTTTTCTCTTTTCTTTTCTCTATTATCTATACTATTTTTTT
TTCTTTTTTTCCCCTTCCCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGTATTAGTCTAACCAAGCAAC
TAAACAGAGAGAACAAATGCCAAAATTTGAAAAAGCCAAGTTTTGGTATC
CAGAATTGGTACAAGGTCTAATATGTATGATTTAATTGTCTAAAGTGAAA
AACATCAAGAAACAGGGTATTGTGGTGAATAGATTTTTTACACTTTACTT
TTTTGATTGAATTTTTTTCATTAGATATTTCTTTATTAACATTTCAAATG
TTATCCCCTTTCCTGGTTTCACCTCCAAAACCTCCCTATTCATTTCCCCC
TCCTCCTGCTCTCCAGTCCTCCCACTACCACTTCCCTGTCCTGGCATTCC
CCTACACTGTCATATCAAGCCTTCTCAGGACCAAGGGCCTCTCCTTCCAT
TGATGTCCAACAAGGCCATCCTTTGCTACATAGGCATCTGGAGCCATGGG
TCCCTCCATGTATACTCTTTGGGTGGTGGTTTTGTATCTGGGAGCTCTGG
GNGTACAGGTAGACTTTTAAGGNGACCAAAAGTGACATTATTAAATGAAG
GCTGCCAAGCATCTTCTTTATTATCAAGTAATTTTTCTTATAATTCAAGA
ACTAAAAAGAATTACCTCTAAAGTCAAGGGAAAGATTATATCCCCTTTAA
ATAATATTAAAGAATCTTTTGCCTTTTAATTTATAAAACCGCAGAATATA
ACTTTTTATTGGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_k12.g1 MSMg01no369_k12.g1 CHROMAT_FILE:
MSMg01no369_k12.g1 PHD_FILE: MSMg01no369_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:26 2005
         (446 letters)



>mm_chr5_78913330_78914175
          Length = 846

 Score =  737 bits (381), Expect = 0.0
 Identities = 384/385 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtattagtctaaccaagcaactaaacagagagaacaaatgccaaaatttgaaaaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actgtattagtctaaccaagcaactaaacagagagaacaaatgccaaaatttgaaaaagc 326

                                                                       
Query: 61  caagttttggtatccagaattggtacaaggtctaatatgtatgatttaattgtctaaagt 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 caagttttggtatccagaattggtacaaggtctaatgtgtatgatttaattgtctaaagt 266

                                                                       
Query: 121 gaaaaacatcaagaaacagggtattgtggtgaatagattttttacactttacttttttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaaaacatcaagaaacagggtattgtggtgaatagattttttacactttacttttttga 206

                                                                       
Query: 181 ttgaatttttttcattagatatttctttattaacatttcaaatgttatcccctttcctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ttgaatttttttcattagatatttctttattaacatttcaaatgttatcccctttcctgg 146

                                                                       
Query: 241 tttcacctccaaaacctccctattcatttccccctcctcctgctctccagtcctcccact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tttcacctccaaaacctccctattcatttccccctcctcctgctctccagtcctcccact 86

                                                                       
Query: 301 accacttccctgtcctggcattcccctacactgtcatatcaagccttctcaggaccaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  accacttccctgtcctggcattcccctacactgtcatatcaagccttctcaggaccaagg 26

                                    
Query: 361 gcctctccttccattgatgtccaac 385
           |||||||||||||||||||||||||
Sbjct: 25  gcctctccttccattgatgtccaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)