BAC Information

Click to search

BAC

Clone NameMSMg01-371L12
Chromosome5 (Build37)
Map Location 151,323,518 - 151,323,964
singlet/doubletsinglet
Overlap genenone
Upstream gene4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419
Downstream geneBrca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371L12.T7 (MSMg01no371_l12.b1)MSMg01-371L12.TJ (MSMg01no371_l12.g1)
ACCAG478156AG478157
length779796
length of high quality
(start - end)		464 (74 - 537)451 (47 - 497)
definitionCHROMAT_FILE: MSMg01no371_l12.b1 PHD_FILE: MSMg01no371_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:16 2005CHROMAT_FILE: MSMg01no371_l12.g1 PHD_FILE: MSMg01no371_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAATCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATCTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCCAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACCTTCCCAAAGGAACTCCCACAAAATGGATCCTCGGGAAAAAA
GATTTTAACCCCAAAACCTAGGATACCCCAGGATATAGGATACAATTTTC
CTAAAGCTTGGAGAACCACGAAAAATTGGAGAAGGTATGTGGGTGCTCCA
TGCCCCCCCCTTTAAAAAAGGGGAAAAAA

NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATAATGCTTGCTAGTTAACAATCTGAGTAGCTGAGCTCAAATC
ATACAAAGTCTATTAGAACAGACAGACATGGTTGGGAGGTTCCTTGTACC
AAGAACACAAAATGTAGTCATGAGCTGTTAAAGGCCAGGAGGGTGTGATA
CTGAGCTATCTTTCAGGGGGTGAAATGTGTCAAGGCTTCTCATTATTCCA
CTCTAGTGAGACACCTCTCTCCTCCAACTTCCCCGGGGGAAGAAGCAATT
TTTTTCTTTTCTAAGTAGAAATTACTGTGCATTTTATTGTTTGAGTGCTT
TGTCTGCATGTACATCTATCTGCAGGCCAGGAGAAGGCATCAGATCCCAT
TACAGATGGTTGTAAGTCATCACGAGGGTGCTGGAAATTGAATTGAGGAC
CTCTGGAAGAGCAGCCAGTGCCCTCAACTGTTCAGCTGTCTCTCTGGCCC
CAATATGTTTTTTTTCCAGACAGAGTTTCTCTGTGTAGAACAGGGCTAGC
CTCGAACTCATAAAGATTCAGCCTGCCTCTGCCTTCCCAGTGGTTGGGAA
TAAAAAAATAAGGCCACCCTTTGTCCTCATTTTACAAGGCAAACAAAAAC
CCATGGTGTTTTTATCCTTATTTTTATAACCCTCTCCCTGCTTATTTTTA
TCCCCCTGGTGCTAGGGCTTAAAACTGCTTTCTGAGTTGTAATAATCGAC
TACCTTCTTCCGTGGTTTCTTCCTTTTGTAATTTTTTCCACCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_l12.g1 MSMg01no371_l12.g1 CHROMAT_FILE:
MSMg01no371_l12.g1 PHD_FILE: MSMg01no371_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:16 2005
         (451 letters)



>mm_chr5_151323314_151324164
          Length = 851

 Score =  826 bits (427), Expect = 0.0
 Identities = 442/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaataatgcttgctagttaacaatctgagtagctgagctcaaatcatacaaagtc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaataatgcttggtagttaacaatctgagtagctgagctcaaatcatacaaagtc 264

                                                                       
Query: 65  tattagaacagacagacatggttgggaggttccttgtaccaagaacacaaaatgtagtca 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 tattagaacagacagacatggttgggaggttccttgtaccaagaacacaaaacgtagtca 324

                                                                       
Query: 125 tgagctgttaaaggccaggagggtgtgatactgagctatctttcagggggtgaaatgtgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgagctgttaaaggccaggagggtgtgatactgagctatctttcagggggtgaaatgtgt 384

                                                                       
Query: 185 caaggcttctcattattccactctagtgagacacctctctcctccaacttccccggggga 244
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 caaggcttctcattattccactctagtgagacacctctctcctccgacttccccggggga 444

                                                                       
Query: 245 agaagcaatttttttcttttctaagtagaaattactgtgcattttattgtttgagtgctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaagcaatttttttcttttctaagtagaaattactgtgcattttattgtttgagtgctt 504

                                                                       
Query: 305 tgtctgcatgtacatctatctgcaggccaggagaaggcatcagatcccattacagatggt 364
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtctgcatgtacatctatctgcacgccaggagaaggcatcagatcccattacagatggt 564

                                                                       
Query: 365 tgtaagtcatcacgagggtgctggaaattgaattgaggacctctggaagagcagccagtg 424
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtaagtcatcatgagggtgctggaaattgaattgaggacctctggaagagcagccagtg 624

                                      
Query: 425 ccctcaactgttcagctgtctctctgg 451
           |||||||||||||||||||||||||||
Sbjct: 625 ccctcaactgttcagctgtctctctgg 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |