XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCTC
AACAGATTTATCTCAAATGACAGAGAAGTGATTAAAGAAATGCTCAAAGT
CCCTACTCATGAGCAACATGCAAATCAAAAGGACTCTGAAAGTCCATCTT
ACACTGGACAGAATGGCTAAGATCCAAAACTCAAGTGAAAGCATACTCTG
GCGAGGATGTGGAGCAAAGAAAACTCTCCTCCACTGTTGATGGGAGTGCA
AACTTGTACAAACCCTTTGGAAATCAATTTTGTGGTTTCTCAGAAAACTG
GGAATCGATGTACCTTAAGATGCAGCTATACCACTCCTGGGCATACACTC
AAAAGATGCCCTATTATACCATAGGGATGATTGCTCAATTATGTGCACAG
CACCTTTTTTTTTGTAATAGCCAGAAATGGAAACAATCTAGATATCCCAC
AGCTGAAGAATGGATAAAGAATAAGTAGTACATCTACATAATGGAATACT
ATTCAGCTATTCAAAACAAAGACACCATGGATTTTTGCAGACAAATAGAT
GGAACTTAATATCATTCTGAGTGAGGCAAATCAAACCCAAAATGACATGC
ATGGTACATACTCACTTTTAAGTGACAATTAGATGTAAAGTACAAGATAC
CCACACTACATTCCACAGACCTAAAGAAGCTATACAAAAAGGAAGACCTA
AGCAAGGATTCTTGAATCTCACTTAGAANGGGGAATCAATATTGGAATGA
NGCACGTGGAGGG

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTAAAGGTAATATTCTTTATCAAGTGATTGCTTTGTCT
GTGGTTGCCACATTTTAAAACACAATAAAACTTAAATTGAAAAGCAGAGC
CAAAAGGTCTGAGACAATTCCATCATTTTCTTTATGGTAGAAAGAACAAT
GTATCTGAGAGTTTATAAATGTGCCTTTACTTTAAATTTAATTCCTGTAA
GTGCACAGTTAAAACAGAAAATAAAATGCAATATGGTTTCTTTCTTTGAA
TTCTGCTATTAAAATGATCACTCTTAATGGTTTTTTTTTTGTTCTCATAA
GGTTCCCCCAACTTAAAAAGTAGACATATTTTTCATCACATGAAATGACA
CACTAAACATAACTAATTTAATTACATGGTTCTTTAGGAATTTAATATTT
GTTCATTTCAAAGATGAATTAATTTTGTGATTGTGATTTTTGTGGATCTG
TTGCAGGAAATCGGGCAAATGTAAGGTGTAGGCTTAGATTTTTCTAAACC
TACCTTTAATAAGGGTTCTTTAATGCTTTAACCTCCCTTTTAGTCCACCA
CCCCCAAGAAGGAGTAGAAAAAAAGGTATTAAAGGACAAGTGAAGTGGCC
CTGGTTTTAAAAAATTCTTTTGAAGAAATCCACCTGTGCCTGTCGAAAAA
ATTAAAAAAGCTATTTCCTCCGCGCGCGAAAATAAAAAGGAATAACAATG
GGGGGCCGCCTTAAAAAAATTCAGGCTT

Query= MSMg01no372_b23.g1 MSMg01no372_b23.g1 CHROMAT_FILE:
MSMg01no372_b23.g1 PHD_FILE: MSMg01no372_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:48 2005
         (420 letters)



>mm_chr5_17983478_17984301
          Length = 824

 Score =  801 bits (414), Expect = 0.0
 Identities = 420/424 (99%), Gaps = 4/424 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaggtaatattctttatcaagtgattgctttgtctgtggttgccacattttaaaacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaggtaatattctttatcaagtgattgctttgtctgtggttgccacattttaaaacac 260

                                                                       
Query: 61  aataaaacttaaattgaaaagcagagccaaaaggtctgagacaattccatcattttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaaacttaaattgaaaagcagagccaaaaggtctgagacaattccatcattttcttt 320

                                                                       
Query: 121 atggtagaaagaacaatgtatctgagagtttataaatgtgcctttactttaaatttaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggtagaaagaacaatgtatctgagagtttataaatgtgcctttactttaaatttaatt 380

                                                                       
Query: 181 cctgtaagtgcacagttaaaacagaaaataaaatgcaatatggtttctttctttgaattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgtaagtgcacagttaaaacagaaaataaaatgcaatatggtttctttctttgaattc 440

                                                                       
Query: 241 tgctattaaaatgatcactcttaatggtttttttttt----gttctcataaggttccccc 296
           |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||
Sbjct: 441 tgctattaaaatgatcactcttaatggttttttttttttttgttctcataaggttccccc 500

                                                                       
Query: 297 aacttaaaaagtagacatatttttcatcacatgaaatgacacactaaacataactaattt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacttaaaaagtagacatatttttcatcacatgaaatgacacactaaacataactaattt 560

                                                                       
Query: 357 aattacatggttctttaggaatttaatatttgttcatttcaaagatgaattaattttgtg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattacatggttctttaggaatttaatatttgttcatttcaaagatgaattaattttgtg 620

               
Query: 417 attg 420
           ||||
Sbjct: 621 attg 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 824
Length adjustment: 9
Effective length of query: 411
Effective length of database: 815
Effective search space:   334965
Effective search space used:   334965
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)