BAC Information

Click to search

BAC

Clone NameMSMg01-372C09
Chromosome5 (Build37)
Map Location 104,970,230 - 104,970,766
singlet/doubletsinglet
Overlap geneD930016D06Rik
Upstream genePtpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172
Downstream gene2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372C09.T7 (MSMg01no372_c09.b1)MSMg01-372C09.TJ (MSMg01no372_c09.g1)
ACCAG478480AG478481
length736742
length of high quality
(start - end)		606 (67 - 672)537 (72 - 608)
definitionCHROMAT_FILE: MSMg01no372_c09.b1 PHD_FILE: MSMg01no372_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:50 2005CHROMAT_FILE: MSMg01no372_c09.g1 PHD_FILE: MSMg01no372_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGGATCCCCAAAGACATACAGAGAAACCCTGTCTCAAAAAAACAAAAAA
AACCCAACCAAACAAAAAGAAGAGCAGGCCATTCCCTGGTGAGGAAATGC
CATCAATAAGATGAAGTATGATCTTGTCCTTATATTAGCTGCTGATCTAT
AACCTGACACACAGCTTCTCAGCTGACATAATTACATCAACAAAGTTTGA
TCCCACAGAACCTCCCCAACTTGTATACCCACCAATCTGAACAATTTCTA
TAAACATGCATGATATTAATAAATGCTGAGGAATTTAAACACTCACTCAC
TTTGCCCCCTCCTTCCTAATGGTGACTCCTGATGATGACTCCTTAAACTT
TAGTCTATCAGCTAGCTCTTGTCTACATTGTTTCACCCTACTGTGTACAC
AGTAAACTATTCCTCCTGTTCTAGTCTGAAGGCAGAAGACATGTTCCACA
TGAAAGCACTTTTCCTTTCACTGCAAAGGACAGTTAATTACCCGGTGTAT
ATGAGTAATTTTAAAAAACACTCTTGTACATACATTTAACATACGGACTT
AAGAAGTTTAATGAAAAAGGGAAGCAGGGTCATTGCCCTGGGAAGAAAGA
GACTGGGATCCATTTGACAACATAGCTTGTCTCAGAAACATTTTTCTAAA
AGGCTAAAGGTGCAGCTGTACTAAAATTAACATTGC

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAAATTGAACATGATTGTCAGCACATGA
AAGGTGCCTCAGGGAGAGTGCAGGTGAGTCTAGTGCAGAGGGTCTAATTG
GATTCCATACCCATCCTAATTGGTTGACCACTGCCCGTTCACGCCCCTCC
TCTCTCAGCGTCCCGAGGCAGCTAGCTGGCTTCTGCATGCAGGGTTTATG
TTGTCAGTACTTCAGTTACAATACAGCTTTCTGTTGTTTGACTCCTTATA
TGTAAGTTAAAGGTAATAACTTCTAATTAGTACCCTGATTATTCAAAAGA
GATAAAGGTATGATAATATACAAAAATATAAAAATTCCAACTTAACAGTG
AAATGAAAGTAAAAACTTACAATGAGGCTAAAGAATACATTTTGGAAACA
TAAATATGTTTGTAATTAATGGGCTATAATCTAGCCTACCTGGCCCTAAA
ACTATTTTTAAATGTTTATTATTTTTAATAGGGTATACGTGTCTGTGTCT
GGAAGAACAATCAAGTGCTTTTAACTGCTGAGCTCTGGCCCAAAAAATTT
TAATAATCAAGAGTAACCTGATTTGCAGTATAATTAAATGTCCATGTGAA
TAAGAAAAGGTTAGCTGGAGAGAAAGGAAGTTACCTGTTTGGTTTATTTT
GTGGCCCTTGGAATACCAACATTGTTTCACTGATCCTTTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_c09.g1 MSMg01no372_c09.g1 CHROMAT_FILE:
MSMg01no372_c09.g1 PHD_FILE: MSMg01no372_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:50 2005
         (537 letters)



>mm_chr5_104970030_104970966
          Length = 937

 Score = 1007 bits (521), Expect = 0.0
 Identities = 533/537 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaattgaacatgattgtcagcacatgaaaggtgcctcagggagagtgcaggtgagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaattgaacatgattgtcagcacatgaaaggtgcctcagggagagtgcaggtgagtct 260

                                                                       
Query: 61  agtgcagagggtctaattggattccatacccatcctaattggttgaccactgcccgttca 120
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgcagagggcctgattggattccatacccatcctaattggttgaccactgcccgttca 320

                                                                       
Query: 121 cgcccctcctctctcagcgtcccgaggcagctagctggcttctgcatgcagggtttatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgcccctcctctctcagcgtcccgaggcagctagctggcttctgcatgcagggtttatgt 380

                                                                       
Query: 181 tgtcagtacttcagttacaatacagctttctgttgtttgactccttatatgtaagttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcagtacttcagttacaatacagctttctgttgtttgactccttatatgtaagttaaa 440

                                                                       
Query: 241 ggtaataacttctaattagtaccctgattattcaaaagagataaaggtatgataatatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtaataacttctaattagtaccctgattattcaaaagagataaaggtatgataatatac 500

                                                                       
Query: 301 aaaaatataaaaattccaacttaacagtgaaatgaaagtaaaaacttacaatgaggctaa 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaagtataaaaattccaacttaacagtgaaatgaaagtaaaaacttacaatgaggctaa 560

                                                                       
Query: 361 agaatacattttggaaacataaatatgtttgtaattaatgggctataatctagcctacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaatacattttggaaacataaatatgtttgtaattaatgggctataatctagcctacct 620

                                                                       
Query: 421 ggccctaaaactatttttaaatgtttattatttttaatagggtatacgtgtctgtgtctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggccctaaaactatttttaaatgtttattatttttaatagggtatacgtgtctgtgtctg 680

                                                                    
Query: 481 gaagaacaatcaagtgcttttaactgctgagctctggcccaaaaaattttaataatc 537
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 gaagaacaatcaagtgcttttaactgctgagctctggccaaaaaaattttaataatc 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |